miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21333 5' -58.1 NC_004778.3 + 15703 0.66 0.76682
Target:  5'- aUGgcGCGCUGCUgCGCgagauGCGCCAauugauaaaaguguuGGCc -3'
miRNA:   3'- aACauCGCGACGA-GUG-----UGCGGU---------------CCGc -5'
21333 5' -58.1 NC_004778.3 + 9466 0.66 0.762969
Target:  5'- ---cGGCGCaGCUCACACugGCaauuGGCGa -3'
miRNA:   3'- aacaUCGCGaCGAGUGUG--CGgu--CCGC- -5'
21333 5' -58.1 NC_004778.3 + 93164 0.66 0.75326
Target:  5'- gUUGgGGCuGCUGCgcguUCACGCGgCC-GGCGg -3'
miRNA:   3'- -AACaUCG-CGACG----AGUGUGC-GGuCCGC- -5'
21333 5' -58.1 NC_004778.3 + 29331 0.66 0.723508
Target:  5'- -gGUGGCGCgGCgcgCGCugggguGCGCCAaGCGg -3'
miRNA:   3'- aaCAUCGCGaCGa--GUG------UGCGGUcCGC- -5'
21333 5' -58.1 NC_004778.3 + 103127 0.67 0.703251
Target:  5'- gUUGUAGCaGUUGCUCguguGCgGCGgCGGGUGg -3'
miRNA:   3'- -AACAUCG-CGACGAG----UG-UGCgGUCCGC- -5'
21333 5' -58.1 NC_004778.3 + 27797 0.67 0.682746
Target:  5'- ----cGCGCUGCacCGCAUGCaCGGGCc -3'
miRNA:   3'- aacauCGCGACGa-GUGUGCG-GUCCGc -5'
21333 5' -58.1 NC_004778.3 + 50216 0.67 0.651688
Target:  5'- -aGUGGCGC-GCgacggucacCACGCGCCguuucguaGGGCGa -3'
miRNA:   3'- aaCAUCGCGaCGa--------GUGUGCGG--------UCCGC- -5'
21333 5' -58.1 NC_004778.3 + 73191 0.67 0.651688
Target:  5'- ---gAGuCGCUGCUCugauuCAgGCUGGGCGa -3'
miRNA:   3'- aacaUC-GCGACGAGu----GUgCGGUCCGC- -5'
21333 5' -58.1 NC_004778.3 + 60341 0.68 0.641291
Target:  5'- -gGUAGgGUUGCgcgcguagauuUCGCGCGCCAGcuccaGCGg -3'
miRNA:   3'- aaCAUCgCGACG-----------AGUGUGCGGUC-----CGC- -5'
21333 5' -58.1 NC_004778.3 + 56983 0.68 0.640251
Target:  5'- ---cGGCGCUGgaCcugugcgGCGgGCCAGGCGa -3'
miRNA:   3'- aacaUCGCGACgaG-------UGUgCGGUCCGC- -5'
21333 5' -58.1 NC_004778.3 + 43374 0.68 0.630887
Target:  5'- -cGUGGUGUUGCcgcagCACGCGUacguuuugcggCAGGCGu -3'
miRNA:   3'- aaCAUCGCGACGa----GUGUGCG-----------GUCCGC- -5'
21333 5' -58.1 NC_004778.3 + 51358 0.68 0.620484
Target:  5'- cUGUacgAGUGUUGgUCA-GCGCCAGGUGg -3'
miRNA:   3'- aACA---UCGCGACgAGUgUGCGGUCCGC- -5'
21333 5' -58.1 NC_004778.3 + 88130 0.68 0.609051
Target:  5'- ---gGGCGCUGUuaaaaaaUUACGCGCCGccuGGCGu -3'
miRNA:   3'- aacaUCGCGACG-------AGUGUGCGGU---CCGC- -5'
21333 5' -58.1 NC_004778.3 + 8892 0.69 0.57904
Target:  5'- -gGUGGCGC-GC-CACgGCGCC-GGCGg -3'
miRNA:   3'- aaCAUCGCGaCGaGUG-UGCGGuCCGC- -5'
21333 5' -58.1 NC_004778.3 + 68254 0.69 0.57904
Target:  5'- -gGUGGaUGCUGCgucgCugGCGCuCGGGCu -3'
miRNA:   3'- aaCAUC-GCGACGa---GugUGCG-GUCCGc -5'
21333 5' -58.1 NC_004778.3 + 95923 0.69 0.568759
Target:  5'- -cGgcGCGCUGCcgCGCggauaGCGCCcGGCGc -3'
miRNA:   3'- aaCauCGCGACGa-GUG-----UGCGGuCCGC- -5'
21333 5' -58.1 NC_004778.3 + 28126 0.69 0.548342
Target:  5'- gUGUucGCGCUGCgaagCGCACGCCu-GCa -3'
miRNA:   3'- aACAu-CGCGACGa---GUGUGCGGucCGc -5'
21333 5' -58.1 NC_004778.3 + 77600 0.7 0.518173
Target:  5'- -gGUGGCGCUGCUUAUguACGU--GGCGu -3'
miRNA:   3'- aaCAUCGCGACGAGUG--UGCGguCCGC- -5'
21333 5' -58.1 NC_004778.3 + 27571 0.7 0.49843
Target:  5'- -cGUGGacCGCUGCcUGCGCGCCAccGGCGu -3'
miRNA:   3'- aaCAUC--GCGACGaGUGUGCGGU--CCGC- -5'
21333 5' -58.1 NC_004778.3 + 57916 0.7 0.49843
Target:  5'- gUGUGGCGCU--UgGCGCGgCGGGCGu -3'
miRNA:   3'- aACAUCGCGAcgAgUGUGCgGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.