Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21333 | 5' | -58.1 | NC_004778.3 | + | 103127 | 0.67 | 0.703251 |
Target: 5'- gUUGUAGCaGUUGCUCguguGCgGCGgCGGGUGg -3' miRNA: 3'- -AACAUCG-CGACGAG----UG-UGCgGUCCGC- -5' |
|||||||
21333 | 5' | -58.1 | NC_004778.3 | + | 29331 | 0.66 | 0.723508 |
Target: 5'- -gGUGGCGCgGCgcgCGCugggguGCGCCAaGCGg -3' miRNA: 3'- aaCAUCGCGaCGa--GUG------UGCGGUcCGC- -5' |
|||||||
21333 | 5' | -58.1 | NC_004778.3 | + | 93164 | 0.66 | 0.75326 |
Target: 5'- gUUGgGGCuGCUGCgcguUCACGCGgCC-GGCGg -3' miRNA: 3'- -AACaUCG-CGACG----AGUGUGC-GGuCCGC- -5' |
|||||||
21333 | 5' | -58.1 | NC_004778.3 | + | 9466 | 0.66 | 0.762969 |
Target: 5'- ---cGGCGCaGCUCACACugGCaauuGGCGa -3' miRNA: 3'- aacaUCGCGaCGAGUGUG--CGgu--CCGC- -5' |
|||||||
21333 | 5' | -58.1 | NC_004778.3 | + | 15703 | 0.66 | 0.76682 |
Target: 5'- aUGgcGCGCUGCUgCGCgagauGCGCCAauugauaaaaguguuGGCc -3' miRNA: 3'- aACauCGCGACGA-GUG-----UGCGGU---------------CCGc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home