miRNA: 3'- aacauCGCGACGa-GUGUGCG-GUCCGc -5'
miRNA: 3'- aaCAUC--GCGACGaGUGUGCGGU--CCGC- -5'
miRNA: 3'- aACauCGCGACGA-GUG-----UGCGGU---------------CCGc -5'
miRNA: 3'- aacaUCGCGaCGAGUGUG--CGgu--CCGC- -5'
miRNA: 3'- aaCAUCGCGaCGaGUG-UGCGGuCCGC- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 21333 | 5' | -58.1 | NC_004778.3 | + | 27797 | 0.67 | 0.682746 |
|
Target: 5'- ----cGCGCUGCacCGCAUGCaCGGGCc -3' miRNA: 3'- aacauCGCGACGa-GUGUGCG-GUCCGc -5' |
|||||||
| 21333 | 5' | -58.1 | NC_004778.3 | + | 27571 | 0.7 | 0.49843 |
|
Target: 5'- -cGUGGacCGCUGCcUGCGCGCCAccGGCGu -3' miRNA: 3'- aaCAUC--GCGACGaGUGUGCGGU--CCGC- -5' |
|||||||
| 21333 | 5' | -58.1 | NC_004778.3 | + | 15703 | 0.66 | 0.76682 |
|
Target: 5'- aUGgcGCGCUGCUgCGCgagauGCGCCAauugauaaaaguguuGGCc -3' miRNA: 3'- aACauCGCGACGA-GUG-----UGCGGU---------------CCGc -5' |
|||||||
| 21333 | 5' | -58.1 | NC_004778.3 | + | 9466 | 0.66 | 0.762969 |
|
Target: 5'- ---cGGCGCaGCUCACACugGCaauuGGCGa -3' miRNA: 3'- aacaUCGCGaCGAGUGUG--CGgu--CCGC- -5' |
|||||||
| 21333 | 5' | -58.1 | NC_004778.3 | + | 8892 | 0.69 | 0.57904 |
|
Target: 5'- -gGUGGCGC-GC-CACgGCGCC-GGCGg -3' miRNA: 3'- aaCAUCGCGaCGaGUG-UGCGGuCCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home