miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21334 5' -50.9 NC_004778.3 + 31416 0.66 0.988463
Target:  5'- gCGCgaACGCAA-GUUUcucggcgcgaGGUGCGCGCGCc -3'
miRNA:   3'- -GCGg-UGUGUUaUAAA----------CCGCGUGCGUG- -5'
21334 5' -50.9 NC_004778.3 + 14682 0.66 0.988463
Target:  5'- uCGUCcgGCACGAcg--UGaCGCACGCGCg -3'
miRNA:   3'- -GCGG--UGUGUUauaaACcGCGUGCGUG- -5'
21334 5' -50.9 NC_004778.3 + 117664 0.66 0.988463
Target:  5'- cCGCUACA----AUUUGGCGCGUGuCGCu -3'
miRNA:   3'- -GCGGUGUguuaUAAACCGCGUGC-GUG- -5'
21334 5' -50.9 NC_004778.3 + 108444 0.66 0.988463
Target:  5'- nCGCCGCGgGcuGUAUUUGuuGUACGgACa -3'
miRNA:   3'- -GCGGUGUgU--UAUAAACcgCGUGCgUG- -5'
21334 5' -50.9 NC_004778.3 + 75752 0.66 0.988463
Target:  5'- aUGUCGCGCuccuc--GGCGCugGCGg -3'
miRNA:   3'- -GCGGUGUGuuauaaaCCGCGugCGUg -5'
21334 5' -50.9 NC_004778.3 + 93600 0.66 0.988002
Target:  5'- aGCCAC-CAAacacccaugcUGUgcgUGGCGCGCgaauucaauugucuGCGCg -3'
miRNA:   3'- gCGGUGuGUU----------AUAa--ACCGCGUG--------------CGUG- -5'
21334 5' -50.9 NC_004778.3 + 16135 0.66 0.987526
Target:  5'- cCGCCACGCGAacaacuucgacucgcUGUgcgacGUGCGCGuCGCg -3'
miRNA:   3'- -GCGGUGUGUU---------------AUAaac--CGCGUGC-GUG- -5'
21334 5' -50.9 NC_004778.3 + 26333 0.66 0.98687
Target:  5'- uGCCGCGCAAa-----GCGCAacUGCGCa -3'
miRNA:   3'- gCGGUGUGUUauaaacCGCGU--GCGUG- -5'
21334 5' -50.9 NC_004778.3 + 103377 0.66 0.98687
Target:  5'- uCGCCuUugG-----UGGCGCugGCGCc -3'
miRNA:   3'- -GCGGuGugUuauaaACCGCGugCGUG- -5'
21334 5' -50.9 NC_004778.3 + 69910 0.66 0.98687
Target:  5'- gCGCCACAcCAGUGgcaccagugcgUUGGCugaGCGCAg -3'
miRNA:   3'- -GCGGUGU-GUUAUa----------AACCGcg-UGCGUg -5'
21334 5' -50.9 NC_004778.3 + 31917 0.66 0.98687
Target:  5'- uCGCUAUACAAcccGUUggagcUGGCG-ACGCGCc -3'
miRNA:   3'- -GCGGUGUGUUa--UAA-----ACCGCgUGCGUG- -5'
21334 5' -50.9 NC_004778.3 + 4139 0.66 0.986187
Target:  5'- gGCCcuucccaACGCGAUGUUU-GCGCucuacgaguacaugACGCGCa -3'
miRNA:   3'- gCGG-------UGUGUUAUAAAcCGCG--------------UGCGUG- -5'
21334 5' -50.9 NC_004778.3 + 52766 0.66 0.985112
Target:  5'- uCGCCGCGCGAU-UUUGccaauCGCGCGacaACg -3'
miRNA:   3'- -GCGGUGUGUUAuAAACc----GCGUGCg--UG- -5'
21334 5' -50.9 NC_004778.3 + 90805 0.66 0.985112
Target:  5'- uCGaCCGCGCugacGUUgacGGCGUGCGCAa -3'
miRNA:   3'- -GC-GGUGUGuua-UAAa--CCGCGUGCGUg -5'
21334 5' -50.9 NC_004778.3 + 47511 0.66 0.985112
Target:  5'- aCGCCGCACGcUGUgcagcGGCggcaucaccucGUugGCACc -3'
miRNA:   3'- -GCGGUGUGUuAUAaa---CCG-----------CGugCGUG- -5'
21334 5' -50.9 NC_004778.3 + 28106 0.66 0.985112
Target:  5'- aCGCCuGCACGAgcgccauUUUGugauacGCGuCGCGCACg -3'
miRNA:   3'- -GCGG-UGUGUUau-----AAAC------CGC-GUGCGUG- -5'
21334 5' -50.9 NC_004778.3 + 116032 0.66 0.985112
Target:  5'- uGCgCACGuCGAUugGUccGGCGUGCGCAUg -3'
miRNA:   3'- gCG-GUGU-GUUA--UAaaCCGCGUGCGUG- -5'
21334 5' -50.9 NC_004778.3 + 22584 0.66 0.985112
Target:  5'- gGCgGCACAAag--UGGCGCG-GCAa -3'
miRNA:   3'- gCGgUGUGUUauaaACCGCGUgCGUg -5'
21334 5' -50.9 NC_004778.3 + 52608 0.66 0.985112
Target:  5'- uGUCGCGCGAUA--UGGCaaaauCGCGCg -3'
miRNA:   3'- gCGGUGUGUUAUaaACCGcgu--GCGUG- -5'
21334 5' -50.9 NC_004778.3 + 4346 0.66 0.984361
Target:  5'- aGCCGCuACGGUucaauccaugGGUGCAaUGCACg -3'
miRNA:   3'- gCGGUG-UGUUAuaaa------CCGCGU-GCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.