Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21335 | 3' | -48.8 | NC_004778.3 | + | 123878 | 0.66 | 0.997436 |
Target: 5'- gCAGCAUGUGCaauaGAGcGACacCGACGUGc -3' miRNA: 3'- aGUUGUACAUG----CUC-CUGacGUUGCAC- -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 121242 | 0.66 | 0.996948 |
Target: 5'- gCGGCGaGU-CGGGGuCUGCGGCGg- -3' miRNA: 3'- aGUUGUaCAuGCUCCuGACGUUGCac -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 25839 | 0.66 | 0.996948 |
Target: 5'- gCGACG---GCGGcGGAUUGUAGCGUGc -3' miRNA: 3'- aGUUGUacaUGCU-CCUGACGUUGCAC- -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 85453 | 0.66 | 0.996948 |
Target: 5'- aCGGCAUGgACGcGGGCguuUGCGGCGg- -3' miRNA: 3'- aGUUGUACaUGCuCCUG---ACGUUGCac -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 36525 | 0.67 | 0.996387 |
Target: 5'- uUCGACAaaguugccuaUG-ACGuuGGAgUGCAGCGUGc -3' miRNA: 3'- -AGUUGU----------ACaUGCu-CCUgACGUUGCAC- -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 121855 | 0.67 | 0.994174 |
Target: 5'- aCAACGUGcccgACGcGGGCcUGC-ACGUGa -3' miRNA: 3'- aGUUGUACa---UGCuCCUG-ACGuUGCAC- -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 61968 | 0.67 | 0.993231 |
Target: 5'- -gAACAUGU-CGGGGcgcuugccGCUGC-GCGUGg -3' miRNA: 3'- agUUGUACAuGCUCC--------UGACGuUGCAC- -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 128345 | 0.69 | 0.982764 |
Target: 5'- aCuGCGUGUAuaucugcgcuugUGGGGACgacgGCGGCGUGu -3' miRNA: 3'- aGuUGUACAU------------GCUCCUGa---CGUUGCAC- -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 56131 | 0.69 | 0.982764 |
Target: 5'- uUCAACAUGcaggACGuGGGCgGCGACa-- -3' miRNA: 3'- -AGUUGUACa---UGCuCCUGaCGUUGcac -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 85555 | 0.69 | 0.982764 |
Target: 5'- gCGACGUGUACGGcgucgcccacgcGGGCguuUGCGGCGg- -3' miRNA: 3'- aGUUGUACAUGCU------------CCUG---ACGUUGCac -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 47369 | 0.69 | 0.978234 |
Target: 5'- aCAGCGUGcgGCGuuauuuuGGGC-GCGACGUGu -3' miRNA: 3'- aGUUGUACa-UGCu------CCUGaCGUUGCAC- -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 25651 | 0.7 | 0.96987 |
Target: 5'- -aAGCuUGcGCGGGGGCcgGCGGCGUGu -3' miRNA: 3'- agUUGuACaUGCUCCUGa-CGUUGCAC- -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 75812 | 0.7 | 0.96987 |
Target: 5'- gUCAAUuUGUugGGcGACUGCGcaGCGUGc -3' miRNA: 3'- -AGUUGuACAugCUcCUGACGU--UGCAC- -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 50917 | 0.7 | 0.963153 |
Target: 5'- aUCGGCAUGauCGAGGGCcuuaGCAACGa- -3' miRNA: 3'- -AGUUGUACauGCUCCUGa---CGUUGCac -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 51188 | 0.7 | 0.963153 |
Target: 5'- cUUAAUAcuuUGCGAGGACgGUAACGUGu -3' miRNA: 3'- -AGUUGUac-AUGCUCCUGaCGUUGCAC- -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 29833 | 0.71 | 0.951226 |
Target: 5'- aUCAACGUGUGCGAucaugaGGACaGCAcCGa- -3' miRNA: 3'- -AGUUGUACAUGCU------CCUGaCGUuGCac -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 29682 | 0.71 | 0.94198 |
Target: 5'- -aGugGUGUGCGAGuAUUGCGGCGUu -3' miRNA: 3'- agUugUACAUGCUCcUGACGUUGCAc -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 74876 | 0.72 | 0.926105 |
Target: 5'- aUCAACAUGUACGA--GCUG--GCGUGg -3' miRNA: 3'- -AGUUGUACAUGCUccUGACguUGCAC- -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 101470 | 0.72 | 0.9078 |
Target: 5'- uUCAGCAUGcGCGucaAGGugUGCGAUGa- -3' miRNA: 3'- -AGUUGUACaUGC---UCCugACGUUGCac -5' |
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21335 | 3' | -48.8 | NC_004778.3 | + | 51395 | 0.73 | 0.872027 |
Target: 5'- -gGGCAUGU-CGAGG-CUGCAACGc- -3' miRNA: 3'- agUUGUACAuGCUCCuGACGUUGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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