miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21335 5' -55.8 NC_004778.3 + 42631 0.67 0.77718
Target:  5'- uUGCGUucccGCCGCcgACGGuGCACGagUGCAAGa -3'
miRNA:   3'- -ACGCG----CGGCG--UGCC-UGUGUa-ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 124566 0.67 0.77718
Target:  5'- cGCGCGCCgagucacguagGCGCGcGCGCAacuuuuUUGCAGu -3'
miRNA:   3'- aCGCGCGG-----------CGUGCcUGUGU------AACGUUu -5'
21335 5' -55.8 NC_004778.3 + 42339 0.67 0.786709
Target:  5'- aUGU-CGCCGCGCGGA-ACAUUGUu-- -3'
miRNA:   3'- -ACGcGCGGCGUGCCUgUGUAACGuuu -5'
21335 5' -55.8 NC_004778.3 + 35158 0.67 0.795158
Target:  5'- uUGCGCGuuGCACaccgugccuuccaGGuguGCGCAcUGCAAAc -3'
miRNA:   3'- -ACGCGCggCGUG-------------CC---UGUGUaACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 129295 0.67 0.805312
Target:  5'- aUGCugGCGCUGUacgccGCGGACGCGccGCAGu -3'
miRNA:   3'- -ACG--CGCGGCG-----UGCCUGUGUaaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 52199 0.67 0.814368
Target:  5'- cGCGCGUCGU-CGGuuACGCAguugUUGCGAc -3'
miRNA:   3'- aCGCGCGGCGuGCC--UGUGU----AACGUUu -5'
21335 5' -55.8 NC_004778.3 + 41822 0.67 0.823248
Target:  5'- -aCGCGCaCGCuguCGGAgGCGUUGgAGAa -3'
miRNA:   3'- acGCGCG-GCGu--GCCUgUGUAACgUUU- -5'
21335 5' -55.8 NC_004778.3 + 103949 0.67 0.805312
Target:  5'- uUGCGCGCCaCACGuGCaaccguucuugGCGUUGCGGc -3'
miRNA:   3'- -ACGCGCGGcGUGCcUG-----------UGUAACGUUu -5'
21335 5' -55.8 NC_004778.3 + 38122 0.67 0.823248
Target:  5'- cUGaCGCGCCGCuACGGcuGCGauuUUGCAu- -3'
miRNA:   3'- -AC-GCGCGGCG-UGCC--UGUgu-AACGUuu -5'
21335 5' -55.8 NC_004778.3 + 121864 0.67 0.823248
Target:  5'- gGCGCGCCGacaACGugcccGACGCGggccUGCAc- -3'
miRNA:   3'- aCGCGCGGCg--UGC-----CUGUGUa---ACGUuu -5'
21335 5' -55.8 NC_004778.3 + 41219 0.67 0.823248
Target:  5'- uUGgGCaCCGCGCuGGACGCGcgacUGCGAGc -3'
miRNA:   3'- -ACgCGcGGCGUG-CCUGUGUa---ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 111907 0.67 0.77718
Target:  5'- gGCGCGCUGUGC-GugAUcgUGCAGu -3'
miRNA:   3'- aCGCGCGGCGUGcCugUGuaACGUUu -5'
21335 5' -55.8 NC_004778.3 + 107700 0.67 0.796089
Target:  5'- gGCGCGCUGCucuGCGGuaagcgACGCG-UGCAu- -3'
miRNA:   3'- aCGCGCGGCG---UGCC------UGUGUaACGUuu -5'
21335 5' -55.8 NC_004778.3 + 19339 0.67 0.796089
Target:  5'- gGUGC-CCGCGC-GACACuUUGCGAc -3'
miRNA:   3'- aCGCGcGGCGUGcCUGUGuAACGUUu -5'
21335 5' -55.8 NC_004778.3 + 75903 0.67 0.805312
Target:  5'- cGCcaGCGCCGaggaGCGcGACAUuUUGCGAAc -3'
miRNA:   3'- aCG--CGCGGCg---UGC-CUGUGuAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 33184 0.67 0.805312
Target:  5'- aGUGCGCCaGCACGcGGCAagggUGCu-- -3'
miRNA:   3'- aCGCGCGG-CGUGC-CUGUgua-ACGuuu -5'
21335 5' -55.8 NC_004778.3 + 48080 0.68 0.761651
Target:  5'- gGUGUGCgGCGCGGACauuuaccacaauacgGCGguacUGCAGAa -3'
miRNA:   3'- aCGCGCGgCGUGCCUG---------------UGUa---ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 57950 0.68 0.767514
Target:  5'- cGCGCGCCuGCGCuGcGCugGcUGCAAAg -3'
miRNA:   3'- aCGCGCGG-CGUGcC-UGugUaACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 106461 0.68 0.767514
Target:  5'- aGCGCGCUGCGCGcGCAaaacgcGCAAc -3'
miRNA:   3'- aCGCGCGGCGUGCcUGUguaa--CGUUu -5'
21335 5' -55.8 NC_004778.3 + 118868 0.68 0.767514
Target:  5'- cGCGCGCaCGCAacugaGGACAaa-UGCGu- -3'
miRNA:   3'- aCGCGCG-GCGUg----CCUGUguaACGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.