miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21335 5' -55.8 NC_004778.3 + 95920 0.71 0.581223
Target:  5'- cGCGCuGCCGCGCGGAUAgCGcccgGCGc- -3'
miRNA:   3'- aCGCG-CGGCGUGCCUGU-GUaa--CGUuu -5'
21335 5' -55.8 NC_004778.3 + 3231 0.71 0.581223
Target:  5'- gGCGCGCCGUgaucACGGACACcauacGCu-- -3'
miRNA:   3'- aCGCGCGGCG----UGCCUGUGuaa--CGuuu -5'
21335 5' -55.8 NC_004778.3 + 53733 0.71 0.5917
Target:  5'- cGCGCGCUGCGCGcaaauuAUACcgaGUUGCAAAa -3'
miRNA:   3'- aCGCGCGGCGUGCc-----UGUG---UAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 77365 0.71 0.5917
Target:  5'- gGCGCGCCGCGCGcuGGUGCAaUGCGc- -3'
miRNA:   3'- aCGCGCGGCGUGC--CUGUGUaACGUuu -5'
21335 5' -55.8 NC_004778.3 + 9884 0.7 0.602208
Target:  5'- cGCGCcgccaaaguGCCGCcCGGGCGCGgugUGCGc- -3'
miRNA:   3'- aCGCG---------CGGCGuGCCUGUGUa--ACGUuu -5'
21335 5' -55.8 NC_004778.3 + 19189 0.7 0.602208
Target:  5'- cGCaaaGUGUCGCGCGGGCACcUUGguGAc -3'
miRNA:   3'- aCG---CGCGGCGUGCCUGUGuAACguUU- -5'
21335 5' -55.8 NC_004778.3 + 90379 0.7 0.623288
Target:  5'- cGUGCGUCaGCGCGGA-GCAggGCGAAa -3'
miRNA:   3'- aCGCGCGG-CGUGCCUgUGUaaCGUUU- -5'
21335 5' -55.8 NC_004778.3 + 112516 0.7 0.633843
Target:  5'- aUGUGCGCCGCguaACGGcuCGCGUUcGUAAGg -3'
miRNA:   3'- -ACGCGCGGCG---UGCCu-GUGUAA-CGUUU- -5'
21335 5' -55.8 NC_004778.3 + 107693 0.69 0.675959
Target:  5'- uUGCGCGUggaggccgccaCGCGCGGucagagcaaaaACGCAUUGUGGAa -3'
miRNA:   3'- -ACGCGCG-----------GCGUGCC-----------UGUGUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 124220 0.69 0.686416
Target:  5'- aGCGCGCCgugcaucuGCACGaGCAC-UUGCAc- -3'
miRNA:   3'- aCGCGCGG--------CGUGCcUGUGuAACGUuu -5'
21335 5' -55.8 NC_004778.3 + 2595 0.69 0.686416
Target:  5'- gGCGUGCCGCAcuCGGGcCACAgguaacgcGCAAu -3'
miRNA:   3'- aCGCGCGGCGU--GCCU-GUGUaa------CGUUu -5'
21335 5' -55.8 NC_004778.3 + 83232 0.69 0.707176
Target:  5'- gGCGgccaGCUGCACGGGCGauuggcugcguUGUUGCAGAc -3'
miRNA:   3'- aCGCg---CGGCGUGCCUGU-----------GUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 14822 0.69 0.707176
Target:  5'- -aCGUGUCGCugGGACACAaaaguuugUUGCu-- -3'
miRNA:   3'- acGCGCGGCGugCCUGUGU--------AACGuuu -5'
21335 5' -55.8 NC_004778.3 + 24848 0.69 0.707176
Target:  5'- -uCGUGCCGUGCGGGCAUGUgGUAGc -3'
miRNA:   3'- acGCGCGGCGUGCCUGUGUAaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 98362 0.69 0.707176
Target:  5'- cGCGCaCCGCGCccGGGCGCA--GCAAc -3'
miRNA:   3'- aCGCGcGGCGUG--CCUGUGUaaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 114363 0.68 0.717461
Target:  5'- cUGCGCGCCGCggGCGaGGCcggcccuuGCGUaGCAAc -3'
miRNA:   3'- -ACGCGCGGCG--UGC-CUG--------UGUAaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 72360 0.68 0.717461
Target:  5'- aGUGCGCCGaCuuGGACGCGc-GCAAc -3'
miRNA:   3'- aCGCGCGGC-GugCCUGUGUaaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 61782 0.68 0.727667
Target:  5'- cGCGCGCUggcuGCGCGGcgccaaACGC-UUGCAGu -3'
miRNA:   3'- aCGCGCGG----CGUGCC------UGUGuAACGUUu -5'
21335 5' -55.8 NC_004778.3 + 121701 0.68 0.727667
Target:  5'- cGUGCaggcCCGCGuCGGGCACGUUGUc-- -3'
miRNA:   3'- aCGCGc---GGCGU-GCCUGUGUAACGuuu -5'
21335 5' -55.8 NC_004778.3 + 10738 0.68 0.737785
Target:  5'- cUGCGCGCUcCGCGGGCuGCcgUGUg-- -3'
miRNA:   3'- -ACGCGCGGcGUGCCUG-UGuaACGuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.