miRNA display CGI


Results 41 - 60 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21335 5' -55.8 NC_004778.3 + 49841 0.76 0.322786
Target:  5'- cUGgGCcCCGCACGGGCGCGcUUGCGGg -3'
miRNA:   3'- -ACgCGcGGCGUGCCUGUGU-AACGUUu -5'
21335 5' -55.8 NC_004778.3 + 52199 0.67 0.814368
Target:  5'- cGCGCGUCGU-CGGuuACGCAguugUUGCGAc -3'
miRNA:   3'- aCGCGCGGCGuGCC--UGUGU----AACGUUu -5'
21335 5' -55.8 NC_004778.3 + 53733 0.71 0.5917
Target:  5'- cGCGCGCUGCGCGcaaauuAUACcgaGUUGCAAAa -3'
miRNA:   3'- aCGCGCGGCGUGCc-----UGUG---UAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 57950 0.68 0.767514
Target:  5'- cGCGCGCCuGCGCuGcGCugGcUGCAAAg -3'
miRNA:   3'- aCGCGCGG-CGUGcC-UGugUaACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 61782 0.68 0.727667
Target:  5'- cGCGCGCUggcuGCGCGGcgccaaACGC-UUGCAGu -3'
miRNA:   3'- aCGCGCGG----CGUGCC------UGUGuAACGUUu -5'
21335 5' -55.8 NC_004778.3 + 65763 0.66 0.856838
Target:  5'- aGCGaGCCGgGCGGugACg--GCGAu -3'
miRNA:   3'- aCGCgCGGCgUGCCugUGuaaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 72360 0.68 0.717461
Target:  5'- aGUGCGCCGaCuuGGACGCGc-GCAAc -3'
miRNA:   3'- aCGCGCGGC-GugCCUGUGUaaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 75649 0.72 0.49937
Target:  5'- cGCGUGCCGCACuagcguuaaGGAgCGCAagUGCAGGu -3'
miRNA:   3'- aCGCGCGGCGUG---------CCU-GUGUa-ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 75903 0.67 0.805312
Target:  5'- cGCcaGCGCCGaggaGCGcGACAUuUUGCGAAc -3'
miRNA:   3'- aCG--CGCGGCg---UGC-CUGUGuAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 76289 0.74 0.4322
Target:  5'- cGCGCGCCGUgaACGGcuCGCAUUugGCAAGc -3'
miRNA:   3'- aCGCGCGGCG--UGCCu-GUGUAA--CGUUU- -5'
21335 5' -55.8 NC_004778.3 + 77365 0.71 0.5917
Target:  5'- gGCGCGCCGCGCGcuGGUGCAaUGCGc- -3'
miRNA:   3'- aCGCGCGGCGUGC--CUGUGUaACGUuu -5'
21335 5' -55.8 NC_004778.3 + 77534 0.71 0.560392
Target:  5'- cGCG-GCCgGCGCGuGCGCAUUGCAc- -3'
miRNA:   3'- aCGCgCGG-CGUGCcUGUGUAACGUuu -5'
21335 5' -55.8 NC_004778.3 + 83110 0.66 0.848746
Target:  5'- uUGCGCGCCGCGaucGACugGUUa---- -3'
miRNA:   3'- -ACGCGCGGCGUgc-CUGugUAAcguuu -5'
21335 5' -55.8 NC_004778.3 + 83232 0.69 0.707176
Target:  5'- gGCGgccaGCUGCACGGGCGauuggcugcguUGUUGCAGAc -3'
miRNA:   3'- aCGCg---CGGCGUGCCUGU-----------GUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 85460 0.66 0.831944
Target:  5'- gGCgGCGaCgGCAUGGACGCGggcguUUGCGGc -3'
miRNA:   3'- aCG-CGC-GgCGUGCCUGUGU-----AACGUUu -5'
21335 5' -55.8 NC_004778.3 + 86130 0.73 0.460366
Target:  5'- aUGCGCGCCgaguucaacgcGCACGGGC-CGUUugcGCAAAu -3'
miRNA:   3'- -ACGCGCGG-----------CGUGCCUGuGUAA---CGUUU- -5'
21335 5' -55.8 NC_004778.3 + 89588 0.77 0.279727
Target:  5'- aGuCGCGCCGCACGcGCGCAUUGUu-- -3'
miRNA:   3'- aC-GCGCGGCGUGCcUGUGUAACGuuu -5'
21335 5' -55.8 NC_004778.3 + 90379 0.7 0.623288
Target:  5'- cGUGCGUCaGCGCGGA-GCAggGCGAAa -3'
miRNA:   3'- aCGCGCGG-CGUGCCUgUGUaaCGUUU- -5'
21335 5' -55.8 NC_004778.3 + 94853 1.06 0.003229
Target:  5'- uUGCGCGCCGCACGGACACAUUGCAAAc -3'
miRNA:   3'- -ACGCGCGGCGUGCCUGUGUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 94990 0.71 0.560392
Target:  5'- gGCGCGCaaccCACcGGCACGUUGCAGu -3'
miRNA:   3'- aCGCGCGgc--GUGcCUGUGUAACGUUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.