Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21335 | 5' | -55.8 | NC_004778.3 | + | 98515 | 0.71 | 0.581223 |
Target: 5'- uUGCuGCGCCcggGCGCGGuGCGCGUcUGCAAc -3' miRNA: 3'- -ACG-CGCGG---CGUGCC-UGUGUA-ACGUUu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 98362 | 0.69 | 0.707176 |
Target: 5'- cGCGCaCCGCGCccGGGCGCA--GCAAc -3' miRNA: 3'- aCGCGcGGCGUG--CCUGUGUaaCGUUu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 97542 | 0.66 | 0.848746 |
Target: 5'- uUGCGCGCCGCcacacgaugGCGGucagcaaauACGCGaUGCc-- -3' miRNA: 3'- -ACGCGCGGCG---------UGCC---------UGUGUaACGuuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 95920 | 0.71 | 0.581223 |
Target: 5'- cGCGCuGCCGCGCGGAUAgCGcccgGCGc- -3' miRNA: 3'- aCGCG-CGGCGUGCCUGU-GUaa--CGUuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 95849 | 0.74 | 0.413991 |
Target: 5'- aUGCGCGCCguaaGCACGGGCgACAUgaccaGCGGu -3' miRNA: 3'- -ACGCGCGG----CGUGCCUG-UGUAa----CGUUu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 95007 | 0.72 | 0.519416 |
Target: 5'- cGCGCGCCGUgcgccgACGGGCAgG-UGCGc- -3' miRNA: 3'- aCGCGCGGCG------UGCCUGUgUaACGUuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 94990 | 0.71 | 0.560392 |
Target: 5'- gGCGCGCaaccCACcGGCACGUUGCAGu -3' miRNA: 3'- aCGCGCGgc--GUGcCUGUGUAACGUUu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 94853 | 1.06 | 0.003229 |
Target: 5'- uUGCGCGCCGCACGGACACAUUGCAAAc -3' miRNA: 3'- -ACGCGCGGCGUGCCUGUGUAACGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 90379 | 0.7 | 0.623288 |
Target: 5'- cGUGCGUCaGCGCGGA-GCAggGCGAAa -3' miRNA: 3'- aCGCGCGG-CGUGCCUgUGUaaCGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 89588 | 0.77 | 0.279727 |
Target: 5'- aGuCGCGCCGCACGcGCGCAUUGUu-- -3' miRNA: 3'- aC-GCGCGGCGUGCcUGUGUAACGuuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 86130 | 0.73 | 0.460366 |
Target: 5'- aUGCGCGCCgaguucaacgcGCACGGGC-CGUUugcGCAAAu -3' miRNA: 3'- -ACGCGCGG-----------CGUGCCUGuGUAA---CGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 85460 | 0.66 | 0.831944 |
Target: 5'- gGCgGCGaCgGCAUGGACGCGggcguUUGCGGc -3' miRNA: 3'- aCG-CGC-GgCGUGCCUGUGU-----AACGUUu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 83232 | 0.69 | 0.707176 |
Target: 5'- gGCGgccaGCUGCACGGGCGauuggcugcguUGUUGCAGAc -3' miRNA: 3'- aCGCg---CGGCGUGCCUGU-----------GUAACGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 83110 | 0.66 | 0.848746 |
Target: 5'- uUGCGCGCCGCGaucGACugGUUa---- -3' miRNA: 3'- -ACGCGCGGCGUgc-CUGugUAAcguuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 77534 | 0.71 | 0.560392 |
Target: 5'- cGCG-GCCgGCGCGuGCGCAUUGCAc- -3' miRNA: 3'- aCGCgCGG-CGUGCcUGUGUAACGUuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 77365 | 0.71 | 0.5917 |
Target: 5'- gGCGCGCCGCGCGcuGGUGCAaUGCGc- -3' miRNA: 3'- aCGCGCGGCGUGC--CUGUGUaACGUuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 76289 | 0.74 | 0.4322 |
Target: 5'- cGCGCGCCGUgaACGGcuCGCAUUugGCAAGc -3' miRNA: 3'- aCGCGCGGCG--UGCCu-GUGUAA--CGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 75903 | 0.67 | 0.805312 |
Target: 5'- cGCcaGCGCCGaggaGCGcGACAUuUUGCGAAc -3' miRNA: 3'- aCG--CGCGGCg---UGC-CUGUGuAACGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 75649 | 0.72 | 0.49937 |
Target: 5'- cGCGUGCCGCACuagcguuaaGGAgCGCAagUGCAGGu -3' miRNA: 3'- aCGCGCGGCGUG---------CCU-GUGUa-ACGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 72360 | 0.68 | 0.717461 |
Target: 5'- aGUGCGCCGaCuuGGACGCGc-GCAAc -3' miRNA: 3'- aCGCGCGGC-GugCCUGUGUaaCGUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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