Results 81 - 86 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21335 | 5' | -55.8 | NC_004778.3 | + | 75903 | 0.67 | 0.805312 |
Target: 5'- cGCcaGCGCCGaggaGCGcGACAUuUUGCGAAc -3' miRNA: 3'- aCG--CGCGGCg---UGC-CUGUGuAACGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 41219 | 0.67 | 0.823248 |
Target: 5'- uUGgGCaCCGCGCuGGACGCGcgacUGCGAGc -3' miRNA: 3'- -ACgCGcGGCGUG-CCUGUGUa---ACGUUU- -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 121864 | 0.67 | 0.823248 |
Target: 5'- gGCGCGCCGacaACGugcccGACGCGggccUGCAc- -3' miRNA: 3'- aCGCGCGGCg--UGC-----CUGUGUa---ACGUuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 38122 | 0.67 | 0.823248 |
Target: 5'- cUGaCGCGCCGCuACGGcuGCGauuUUGCAu- -3' miRNA: 3'- -AC-GCGCGGCG-UGCC--UGUgu-AACGUuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 107922 | 0.66 | 0.831083 |
Target: 5'- cGCGaCGCCGCccgacgaGCGcGACGCggUGCu-- -3' miRNA: 3'- aCGC-GCGGCG-------UGC-CUGUGuaACGuuu -5' |
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21335 | 5' | -55.8 | NC_004778.3 | + | 32826 | 0.66 | 0.848746 |
Target: 5'- cGCGCaGCUGcCGCGG-CGCGUggUGCGu- -3' miRNA: 3'- aCGCG-CGGC-GUGCCuGUGUA--ACGUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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