miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21335 5' -55.8 NC_004778.3 + 107700 0.67 0.796089
Target:  5'- gGCGCGCUGCucuGCGGuaagcgACGCG-UGCAu- -3'
miRNA:   3'- aCGCGCGGCG---UGCC------UGUGUaACGUuu -5'
21335 5' -55.8 NC_004778.3 + 106445 0.66 0.848746
Target:  5'- cUGCG-GCgGgCACGGGCGCugacgAUUGCAGu -3'
miRNA:   3'- -ACGCgCGgC-GUGCCUGUG-----UAACGUUu -5'
21335 5' -55.8 NC_004778.3 + 15602 0.71 0.560392
Target:  5'- gGCGUgGUCGCGCGGAgGCGgcgcUGCGAGc -3'
miRNA:   3'- aCGCG-CGGCGUGCCUgUGUa---ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 14822 0.69 0.707176
Target:  5'- -aCGUGUCGCugGGACACAaaaguuugUUGCu-- -3'
miRNA:   3'- acGCGCGGCGugCCUGUGU--------AACGuuu -5'
21335 5' -55.8 NC_004778.3 + 103949 0.67 0.805312
Target:  5'- uUGCGCGCCaCACGuGCaaccguucuugGCGUUGCGGc -3'
miRNA:   3'- -ACGCGCGGcGUGCcUG-----------UGUAACGUUu -5'
21335 5' -55.8 NC_004778.3 + 48772 0.66 0.848746
Target:  5'- gGuCGCGUCGCuAUGGuCGCAcgGCAAGu -3'
miRNA:   3'- aC-GCGCGGCG-UGCCuGUGUaaCGUUU- -5'
21335 5' -55.8 NC_004778.3 + 61782 0.68 0.727667
Target:  5'- cGCGCGCUggcuGCGCGGcgccaaACGC-UUGCAGu -3'
miRNA:   3'- aCGCGCGG----CGUGCC------UGUGuAACGUUu -5'
21335 5' -55.8 NC_004778.3 + 4607 0.66 0.848746
Target:  5'- cGCGUgccagGCCGCGCGauuccggacgaaGACACugUGCAAAa -3'
miRNA:   3'- aCGCG-----CGGCGUGC------------CUGUGuaACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 32826 0.66 0.848746
Target:  5'- cGCGCaGCUGcCGCGG-CGCGUggUGCGu- -3'
miRNA:   3'- aCGCG-CGGC-GUGCCuGUGUA--ACGUuu -5'
21335 5' -55.8 NC_004778.3 + 85460 0.66 0.831944
Target:  5'- gGCgGCGaCgGCAUGGACGCGggcguUUGCGGc -3'
miRNA:   3'- aCG-CGC-GgCGUGCCUGUGU-----AACGUUu -5'
21335 5' -55.8 NC_004778.3 + 19339 0.67 0.796089
Target:  5'- gGUGC-CCGCGC-GACACuUUGCGAc -3'
miRNA:   3'- aCGCGcGGCGUGcCUGUGuAACGUUu -5'
21335 5' -55.8 NC_004778.3 + 29851 0.68 0.757719
Target:  5'- aGCGCGCCGUuauACGuGAUcaACGUgUGCGAu -3'
miRNA:   3'- aCGCGCGGCG---UGC-CUG--UGUA-ACGUUu -5'
21335 5' -55.8 NC_004778.3 + 41219 0.67 0.823248
Target:  5'- uUGgGCaCCGCGCuGGACGCGcgacUGCGAGc -3'
miRNA:   3'- -ACgCGcGGCGUG-CCUGUGUa---ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 107922 0.66 0.831083
Target:  5'- cGCGaCGCCGCccgacgaGCGcGACGCggUGCu-- -3'
miRNA:   3'- aCGC-GCGGCG-------UGC-CUGUGuaACGuuu -5'
21335 5' -55.8 NC_004778.3 + 5111 0.66 0.840446
Target:  5'- aUGuCGCGgCGCACGcauGACGCGUUGgAc- -3'
miRNA:   3'- -AC-GCGCgGCGUGC---CUGUGUAACgUuu -5'
21335 5' -55.8 NC_004778.3 + 117954 0.66 0.848746
Target:  5'- gGUGCGCCGCuugcgcuuguUGGACACua-GCGu- -3'
miRNA:   3'- aCGCGCGGCGu---------GCCUGUGuaaCGUuu -5'
21335 5' -55.8 NC_004778.3 + 41435 0.72 0.538748
Target:  5'- aGCGCGCuCGCcaagaugACGGACGUcgUGCAGGa -3'
miRNA:   3'- aCGCGCG-GCG-------UGCCUGUGuaACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 77534 0.71 0.560392
Target:  5'- cGCG-GCCgGCGCGuGCGCAUUGCAc- -3'
miRNA:   3'- aCGCgCGG-CGUGCcUGUGUAACGUuu -5'
21335 5' -55.8 NC_004778.3 + 90379 0.7 0.623288
Target:  5'- cGUGCGUCaGCGCGGA-GCAggGCGAAa -3'
miRNA:   3'- aCGCGCGG-CGUGCCUgUGUaaCGUUU- -5'
21335 5' -55.8 NC_004778.3 + 24848 0.69 0.707176
Target:  5'- -uCGUGCCGUGCGGGCAUGUgGUAGc -3'
miRNA:   3'- acGCGCGGCGUGCCUGUGUAaCGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.