miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21335 5' -55.8 NC_004778.3 + 43146 0.72 0.539773
Target:  5'- gGCGCGCCGCACGuuuuugaACGCGgguuuggUGCAc- -3'
miRNA:   3'- aCGCGCGGCGUGCc------UGUGUa------ACGUuu -5'
21335 5' -55.8 NC_004778.3 + 95007 0.72 0.519416
Target:  5'- cGCGCGCCGUgcgccgACGGGCAgG-UGCGc- -3'
miRNA:   3'- aCGCGCGGCG------UGCCUGUgUaACGUuu -5'
21335 5' -55.8 NC_004778.3 + 89588 0.77 0.279727
Target:  5'- aGuCGCGCCGCACGcGCGCAUUGUu-- -3'
miRNA:   3'- aC-GCGCGGCGUGCcUGUGUAACGuuu -5'
21335 5' -55.8 NC_004778.3 + 118868 0.68 0.767514
Target:  5'- cGCGCGCaCGCAacugaGGACAaa-UGCGu- -3'
miRNA:   3'- aCGCGCG-GCGUg----CCUGUguaACGUuu -5'
21335 5' -55.8 NC_004778.3 + 43730 0.74 0.4322
Target:  5'- gGgGCGCCGCGCcgGGACACAUcaUGUg-- -3'
miRNA:   3'- aCgCGCGGCGUG--CCUGUGUA--ACGuuu -5'
21335 5' -55.8 NC_004778.3 + 76289 0.74 0.4322
Target:  5'- cGCGCGCCGUgaACGGcuCGCAUUugGCAAGc -3'
miRNA:   3'- aCGCGCGGCG--UGCCu-GUGUAA--CGUUU- -5'
21335 5' -55.8 NC_004778.3 + 112221 0.71 0.564543
Target:  5'- aGCG-GCCGCGCGGuccaggugauagcacGCGgGUUGCGAGu -3'
miRNA:   3'- aCGCgCGGCGUGCC---------------UGUgUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 3231 0.71 0.581223
Target:  5'- gGCGCGCCGUgaucACGGACACcauacGCu-- -3'
miRNA:   3'- aCGCGCGGCG----UGCCUGUGuaa--CGuuu -5'
21335 5' -55.8 NC_004778.3 + 48080 0.68 0.761651
Target:  5'- gGUGUGCgGCGCGGACauuuaccacaauacgGCGguacUGCAGAa -3'
miRNA:   3'- aCGCGCGgCGUGCCUG---------------UGUa---ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 106461 0.68 0.767514
Target:  5'- aGCGCGCUGCGCGcGCAaaacgcGCAAc -3'
miRNA:   3'- aCGCGCGGCGUGCcUGUguaa--CGUUu -5'
21335 5' -55.8 NC_004778.3 + 57950 0.68 0.767514
Target:  5'- cGCGCGCCuGCGCuGcGCugGcUGCAAAg -3'
miRNA:   3'- aCGCGCGG-CGUGcC-UGugUaACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 10738 0.68 0.737785
Target:  5'- cUGCGCGCUcCGCGGGCuGCcgUGUg-- -3'
miRNA:   3'- -ACGCGCGGcGUGCCUG-UGuaACGuuu -5'
21335 5' -55.8 NC_004778.3 + 121701 0.68 0.727667
Target:  5'- cGUGCaggcCCGCGuCGGGCACGUUGUc-- -3'
miRNA:   3'- aCGCGc---GGCGU-GCCUGUGUAACGuuu -5'
21335 5' -55.8 NC_004778.3 + 72360 0.68 0.717461
Target:  5'- aGUGCGCCGaCuuGGACGCGc-GCAAc -3'
miRNA:   3'- aCGCGCGGC-GugCCUGUGUaaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 98362 0.69 0.707176
Target:  5'- cGCGCaCCGCGCccGGGCGCA--GCAAc -3'
miRNA:   3'- aCGCGcGGCGUG--CCUGUGUaaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 114363 0.68 0.717461
Target:  5'- cUGCGCGCCGCggGCGaGGCcggcccuuGCGUaGCAAc -3'
miRNA:   3'- -ACGCGCGGCG--UGC-CUG--------UGUAaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 53733 0.71 0.5917
Target:  5'- cGCGCGCUGCGCGcaaauuAUACcgaGUUGCAAAa -3'
miRNA:   3'- aCGCGCGGCGUGCc-----UGUG---UAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 11766 0.66 0.856838
Target:  5'- gGCGgaGuuGCGCGGACcCGUUaaaGCAAAa -3'
miRNA:   3'- aCGCg-CggCGUGCCUGuGUAA---CGUUU- -5'
21335 5' -55.8 NC_004778.3 + 47203 0.66 0.864713
Target:  5'- gGCGCGCUGCagaaaaucaaGCuGACGCAcgGCGu- -3'
miRNA:   3'- aCGCGCGGCG----------UGcCUGUGUaaCGUuu -5'
21335 5' -55.8 NC_004778.3 + 37859 0.66 0.864713
Target:  5'- cGaCGCGCaCGCGCaGACu--UUGCAAAg -3'
miRNA:   3'- aC-GCGCG-GCGUGcCUGuguAACGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.