miRNA display CGI


Results 61 - 80 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21335 5' -55.8 NC_004778.3 + 95849 0.74 0.413991
Target:  5'- aUGCGCGCCguaaGCACGGGCgACAUgaccaGCGGu -3'
miRNA:   3'- -ACGCGCGG----CGUGCCUG-UGUAa----CGUUu -5'
21335 5' -55.8 NC_004778.3 + 114363 0.68 0.717461
Target:  5'- cUGCGCGCCGCggGCGaGGCcggcccuuGCGUaGCAAc -3'
miRNA:   3'- -ACGCGCGGCG--UGC-CUG--------UGUAaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 121701 0.68 0.727667
Target:  5'- cGUGCaggcCCGCGuCGGGCACGUUGUc-- -3'
miRNA:   3'- aCGCGc---GGCGU-GCCUGUGUAACGuuu -5'
21335 5' -55.8 NC_004778.3 + 10738 0.68 0.737785
Target:  5'- cUGCGCGCUcCGCGGGCuGCcgUGUg-- -3'
miRNA:   3'- -ACGCGCGGcGUGCCUG-UGuaACGuuu -5'
21335 5' -55.8 NC_004778.3 + 65763 0.66 0.856838
Target:  5'- aGCGaGCCGgGCGGugACg--GCGAu -3'
miRNA:   3'- aCGCgCGGCgUGCCugUGuaaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 110109 0.66 0.848746
Target:  5'- gUGCGCGCCgaGCGCuuGGGCACcg-GCc-- -3'
miRNA:   3'- -ACGCGCGG--CGUG--CCUGUGuaaCGuuu -5'
21335 5' -55.8 NC_004778.3 + 83110 0.66 0.848746
Target:  5'- uUGCGCGCCGCGaucGACugGUUa---- -3'
miRNA:   3'- -ACGCGCGGCGUgc-CUGugUAAcguuu -5'
21335 5' -55.8 NC_004778.3 + 10836 0.66 0.840446
Target:  5'- --aGCGC--CugGGGCGCGUUGCGAGg -3'
miRNA:   3'- acgCGCGgcGugCCUGUGUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 41822 0.67 0.823248
Target:  5'- -aCGCGCaCGCuguCGGAgGCGUUGgAGAa -3'
miRNA:   3'- acGCGCG-GCGu--GCCUgUGUAACgUUU- -5'
21335 5' -55.8 NC_004778.3 + 52199 0.67 0.814368
Target:  5'- cGCGCGUCGU-CGGuuACGCAguugUUGCGAc -3'
miRNA:   3'- aCGCGCGGCGuGCC--UGUGU----AACGUUu -5'
21335 5' -55.8 NC_004778.3 + 129295 0.67 0.805312
Target:  5'- aUGCugGCGCUGUacgccGCGGACGCGccGCAGu -3'
miRNA:   3'- -ACG--CGCGGCG-----UGCCUGUGUaaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 35158 0.67 0.795158
Target:  5'- uUGCGCGuuGCACaccgugccuuccaGGuguGCGCAcUGCAAAc -3'
miRNA:   3'- -ACGCGCggCGUG-------------CC---UGUGUaACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 42339 0.67 0.786709
Target:  5'- aUGU-CGCCGCGCGGA-ACAUUGUu-- -3'
miRNA:   3'- -ACGcGCGGCGUGCCUgUGUAACGuuu -5'
21335 5' -55.8 NC_004778.3 + 124566 0.67 0.77718
Target:  5'- cGCGCGCCgagucacguagGCGCGcGCGCAacuuuuUUGCAGu -3'
miRNA:   3'- aCGCGCGG-----------CGUGCcUGUGU------AACGUUu -5'
21335 5' -55.8 NC_004778.3 + 42631 0.67 0.77718
Target:  5'- uUGCGUucccGCCGCcgACGGuGCACGagUGCAAGa -3'
miRNA:   3'- -ACGCG----CGGCG--UGCC-UGUGUa-ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 34430 0.67 0.775258
Target:  5'- gGCGUGCCcguacugcuguaCACGGGCACGcUGCGc- -3'
miRNA:   3'- aCGCGCGGc-----------GUGCCUGUGUaACGUuu -5'
21335 5' -55.8 NC_004778.3 + 57950 0.68 0.767514
Target:  5'- cGCGCGCCuGCGCuGcGCugGcUGCAAAg -3'
miRNA:   3'- aCGCGCGG-CGUGcC-UGugUaACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 106461 0.68 0.767514
Target:  5'- aGCGCGCUGCGCGcGCAaaacgcGCAAc -3'
miRNA:   3'- aCGCGCGGCGUGCcUGUguaa--CGUUu -5'
21335 5' -55.8 NC_004778.3 + 48080 0.68 0.761651
Target:  5'- gGUGUGCgGCGCGGACauuuaccacaauacgGCGguacUGCAGAa -3'
miRNA:   3'- aCGCGCGgCGUGCCUG---------------UGUa---ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 115298 0.68 0.746809
Target:  5'- aUGCGCcgaaaaaauugagGCgGC-CGGccGCACAUUGCAAAu -3'
miRNA:   3'- -ACGCG-------------CGgCGuGCC--UGUGUAACGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.