miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21335 5' -55.8 NC_004778.3 + 2595 0.69 0.686416
Target:  5'- gGCGUGCCGCAcuCGGGcCACAgguaacgcGCAAu -3'
miRNA:   3'- aCGCGCGGCGU--GCCU-GUGUaa------CGUUu -5'
21335 5' -55.8 NC_004778.3 + 3231 0.71 0.581223
Target:  5'- gGCGCGCCGUgaucACGGACACcauacGCu-- -3'
miRNA:   3'- aCGCGCGGCG----UGCCUGUGuaa--CGuuu -5'
21335 5' -55.8 NC_004778.3 + 4607 0.66 0.848746
Target:  5'- cGCGUgccagGCCGCGCGauuccggacgaaGACACugUGCAAAa -3'
miRNA:   3'- aCGCG-----CGGCGUGC------------CUGUGuaACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 5111 0.66 0.840446
Target:  5'- aUGuCGCGgCGCACGcauGACGCGUUGgAc- -3'
miRNA:   3'- -AC-GCGCgGCGUGC---CUGUGUAACgUuu -5'
21335 5' -55.8 NC_004778.3 + 5466 0.73 0.454654
Target:  5'- cUGCGCGCCugccauggccaacguGUACGGACGCuucUGCGGc -3'
miRNA:   3'- -ACGCGCGG---------------CGUGCCUGUGua-ACGUUu -5'
21335 5' -55.8 NC_004778.3 + 9884 0.7 0.602208
Target:  5'- cGCGCcgccaaaguGCCGCcCGGGCGCGgugUGCGc- -3'
miRNA:   3'- aCGCG---------CGGCGuGCCUGUGUa--ACGUuu -5'
21335 5' -55.8 NC_004778.3 + 10257 0.8 0.187246
Target:  5'- aGCGCGCCgauugcGCGCGGgaccggcgGCGCAUUGCAAAg -3'
miRNA:   3'- aCGCGCGG------CGUGCC--------UGUGUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 10738 0.68 0.737785
Target:  5'- cUGCGCGCUcCGCGGGCuGCcgUGUg-- -3'
miRNA:   3'- -ACGCGCGGcGUGCCUG-UGuaACGuuu -5'
21335 5' -55.8 NC_004778.3 + 10836 0.66 0.840446
Target:  5'- --aGCGC--CugGGGCGCGUUGCGAGg -3'
miRNA:   3'- acgCGCGgcGugCCUGUGUAACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 11766 0.66 0.856838
Target:  5'- gGCGgaGuuGCGCGGACcCGUUaaaGCAAAa -3'
miRNA:   3'- aCGCg-CggCGUGCCUGuGUAA---CGUUU- -5'
21335 5' -55.8 NC_004778.3 + 14822 0.69 0.707176
Target:  5'- -aCGUGUCGCugGGACACAaaaguuugUUGCu-- -3'
miRNA:   3'- acGCGCGGCGugCCUGUGU--------AACGuuu -5'
21335 5' -55.8 NC_004778.3 + 15602 0.71 0.560392
Target:  5'- gGCGUgGUCGCGCGGAgGCGgcgcUGCGAGc -3'
miRNA:   3'- aCGCG-CGGCGUGCCUgUGUa---ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 17252 0.71 0.550052
Target:  5'- gGCGCGCCGCGC--GCACA--GCAAc -3'
miRNA:   3'- aCGCGCGGCGUGccUGUGUaaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 18780 0.66 0.835368
Target:  5'- gGCGCGCgGCguuuuuugcucacggGCguGGGCACGUaacuUGCAGAg -3'
miRNA:   3'- aCGCGCGgCG---------------UG--CCUGUGUA----ACGUUU- -5'
21335 5' -55.8 NC_004778.3 + 19189 0.7 0.602208
Target:  5'- cGCaaaGUGUCGCGCGGGCACcUUGguGAc -3'
miRNA:   3'- aCG---CGCGGCGUGCCUGUGuAACguUU- -5'
21335 5' -55.8 NC_004778.3 + 19339 0.67 0.796089
Target:  5'- gGUGC-CCGCGC-GACACuUUGCGAc -3'
miRNA:   3'- aCGCGcGGCGUGcCUGUGuAACGUUu -5'
21335 5' -55.8 NC_004778.3 + 22410 0.72 0.519416
Target:  5'- aGCGCcaGCgGUACGGGCGCGUcgGCAu- -3'
miRNA:   3'- aCGCG--CGgCGUGCCUGUGUAa-CGUuu -5'
21335 5' -55.8 NC_004778.3 + 24848 0.69 0.707176
Target:  5'- -uCGUGCCGUGCGGGCAUGUgGUAGc -3'
miRNA:   3'- acGCGCGGCGUGCCUGUGUAaCGUUu -5'
21335 5' -55.8 NC_004778.3 + 29851 0.68 0.757719
Target:  5'- aGCGCGCCGUuauACGuGAUcaACGUgUGCGAu -3'
miRNA:   3'- aCGCGCGGCG---UGC-CUG--UGUA-ACGUUu -5'
21335 5' -55.8 NC_004778.3 + 31868 0.68 0.76654
Target:  5'- aGCGCGCCGCGCaGcaaaacCGCAUcgucgagUGCGAc -3'
miRNA:   3'- aCGCGCGGCGUGcCu-----GUGUA-------ACGUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.