miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21336 3' -64.8 NC_004778.3 + 93003 0.66 0.472351
Target:  5'- cCGCCGGCCGCGUgaacGCGCagcagccccaaCgcaggaucacauucaUUCGUGGa -3'
miRNA:   3'- cGCGGCCGGCGCGa---CGCG-----------G---------------AGGCACC- -5'
21336 3' -64.8 NC_004778.3 + 93048 0.69 0.325704
Target:  5'- aCGCCGGCU-CGCUGCGgCUCaagcUGGa -3'
miRNA:   3'- cGCGGCCGGcGCGACGCgGAGgc--ACC- -5'
21336 3' -64.8 NC_004778.3 + 95099 0.67 0.442697
Target:  5'- cGUGCgCGGCCG-GCaaaacgGCGUUUCgGUGGc -3'
miRNA:   3'- -CGCG-GCCGGCgCGa-----CGCGGAGgCACC- -5'
21336 3' -64.8 NC_004778.3 + 95789 1.04 0.001148
Target:  5'- cGCGCCGGCCGCGCUGCGCC-CCGUGGa -3'
miRNA:   3'- -CGCGGCCGGCGCGACGCGGaGGCACC- -5'
21336 3' -64.8 NC_004778.3 + 98511 0.68 0.385135
Target:  5'- uGCGcCCGGgCGCGgUGCGCgUCUGc-- -3'
miRNA:   3'- -CGC-GGCCgGCGCgACGCGgAGGCacc -5'
21336 3' -64.8 NC_004778.3 + 98721 0.69 0.354542
Target:  5'- gGCaGCCGGCCGCggccGCaGCGUgCUUCGUGu -3'
miRNA:   3'- -CG-CGGCCGGCG----CGaCGCG-GAGGCACc -5'
21336 3' -64.8 NC_004778.3 + 111699 0.66 0.477689
Target:  5'- -gGCCGaGCUGUugcaGCgucgGCGCCUCCGa-- -3'
miRNA:   3'- cgCGGC-CGGCG----CGa---CGCGGAGGCacc -5'
21336 3' -64.8 NC_004778.3 + 111756 0.67 0.434176
Target:  5'- uGCGUacuCGGCgCGCGUaacaccgcGCGCCgUCCGUGa -3'
miRNA:   3'- -CGCG---GCCG-GCGCGa-------CGCGG-AGGCACc -5'
21336 3' -64.8 NC_004778.3 + 114087 0.69 0.318771
Target:  5'- uGCGCCauccGCCGCGCU-CGCuCUCCGcGa -3'
miRNA:   3'- -CGCGGc---CGGCGCGAcGCG-GAGGCaCc -5'
21336 3' -64.8 NC_004778.3 + 115091 0.66 0.49569
Target:  5'- -gGCaaaGGCCGCGgUGCGCacgCCGg-- -3'
miRNA:   3'- cgCGg--CCGGCGCgACGCGga-GGCacc -5'
21336 3' -64.8 NC_004778.3 + 118930 0.86 0.021054
Target:  5'- cGCGCCGGCCGCGCcGCGCCcgaagCGUGGc -3'
miRNA:   3'- -CGCGGCCGGCGCGaCGCGGag---GCACC- -5'
21336 3' -64.8 NC_004778.3 + 120967 0.71 0.244202
Target:  5'- gGCGCgGGCCGCGCccGCuGCC-CCGg-- -3'
miRNA:   3'- -CGCGgCCGGCGCGa-CG-CGGaGGCacc -5'
21336 3' -64.8 NC_004778.3 + 121429 0.72 0.212676
Target:  5'- cGCGUCGGCCGUGU--CGCCgCCGUcGGc -3'
miRNA:   3'- -CGCGGCCGGCGCGacGCGGaGGCA-CC- -5'
21336 3' -64.8 NC_004778.3 + 121514 0.66 0.467927
Target:  5'- aGCGUC-GCCGCGCUaaaggugagguaaGCGCCgCCGg-- -3'
miRNA:   3'- -CGCGGcCGGCGCGA-------------CGCGGaGGCacc -5'
21336 3' -64.8 NC_004778.3 + 121677 0.66 0.48665
Target:  5'- cCGCaucGCUGCGCgUGCGCUUCaCGUGc -3'
miRNA:   3'- cGCGgc-CGGCGCG-ACGCGGAG-GCACc -5'
21336 3' -64.8 NC_004778.3 + 124086 0.66 0.504805
Target:  5'- cGCGCUGaugCGCGCgguugGCgGCCUCCGUu- -3'
miRNA:   3'- -CGCGGCcg-GCGCGa----CG-CGGAGGCAcc -5'
21336 3' -64.8 NC_004778.3 + 124310 0.67 0.451311
Target:  5'- gGCGCCGGCgUGgGCacgGCGUCUuCCGg-- -3'
miRNA:   3'- -CGCGGCCG-GCgCGa--CGCGGA-GGCacc -5'
21336 3' -64.8 NC_004778.3 + 125985 0.73 0.189136
Target:  5'- aGCGCaugaaGGCCGCGCaUGaCGCUg-CGUGGg -3'
miRNA:   3'- -CGCGg----CCGGCGCG-AC-GCGGagGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.