Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21336 | 3' | -64.8 | NC_004778.3 | + | 77393 | 0.69 | 0.318771 |
Target: 5'- cGCGCCGGCCGCGU--CGCU--UGUGa -3' miRNA: 3'- -CGCGGCCGGCGCGacGCGGagGCACc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 65903 | 0.68 | 0.409198 |
Target: 5'- cGC-CCGGCU-CGCUGCGCCaaacgCCGUc- -3' miRNA: 3'- -CGcGGCCGGcGCGACGCGGa----GGCAcc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 64161 | 0.7 | 0.285781 |
Target: 5'- cGCGCCcguGGCCGCcgaGCuUGaCGCgUUCGUGGu -3' miRNA: 3'- -CGCGG---CCGGCG---CG-AC-GCGgAGGCACC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 61780 | 0.72 | 0.202971 |
Target: 5'- cGCGCUGGCUGCGCgGCGCCaaaCGc-- -3' miRNA: 3'- -CGCGGCCGGCGCGaCGCGGag-GCacc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 61715 | 0.71 | 0.244202 |
Target: 5'- -aGuuGGCCGuCGUUGCGCCUCaCGa-- -3' miRNA: 3'- cgCggCCGGC-GCGACGCGGAG-GCacc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 61633 | 0.66 | 0.49569 |
Target: 5'- gGCGCCGcGCagccaGCGC-GCGCCaacgCCGcgcgcaugcUGGg -3' miRNA: 3'- -CGCGGC-CGg----CGCGaCGCGGa---GGC---------ACC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 60402 | 0.66 | 0.494782 |
Target: 5'- aGCGUguuucugCGGCUGCGCuUGCGCUUCaggccgauCGUGc -3' miRNA: 3'- -CGCG-------GCCGGCGCG-ACGCGGAG--------GCACc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 60114 | 0.68 | 0.377325 |
Target: 5'- cGCGCUGGCCGUGUUuaGCC-UgGUGu -3' miRNA: 3'- -CGCGGCCGGCGCGAcgCGGaGgCACc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 57948 | 0.66 | 0.477689 |
Target: 5'- cGCGCgCGcCUGCGCUGCGCUggcugcaaagCCaUGGc -3' miRNA: 3'- -CGCG-GCcGGCGCGACGCGGa---------GGcACC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 57764 | 0.66 | 0.504805 |
Target: 5'- aCGCCcGCCGCGCcaaGCGCCacacguauUCCGa-- -3' miRNA: 3'- cGCGGcCGGCGCGa--CGCGG--------AGGCacc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 57104 | 0.66 | 0.504805 |
Target: 5'- cGCGCacuccaacuuuaCGGCgGUGCUGgGCC-CCGacGGa -3' miRNA: 3'- -CGCG------------GCCGgCGCGACgCGGaGGCa-CC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 53286 | 0.66 | 0.504805 |
Target: 5'- aCGCCGGCgGCgguuGCUGUGgCggcgguugCUGUGGc -3' miRNA: 3'- cGCGGCCGgCG----CGACGCgGa-------GGCACC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 51277 | 0.67 | 0.424914 |
Target: 5'- cGCGCCGG-CGUGUacgaauuUGCGUUUUCGcUGGa -3' miRNA: 3'- -CGCGGCCgGCGCG-------ACGCGGAGGC-ACC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 51138 | 0.69 | 0.325704 |
Target: 5'- aCGCCGGCgCGCgGCUGaagcacuuugcCGCCUUCGUa- -3' miRNA: 3'- cGCGGCCG-GCG-CGAC-----------GCGGAGGCAcc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 49389 | 0.68 | 0.409198 |
Target: 5'- gGgGCCGGCCaGCGCcGCGUaCUCgGUa- -3' miRNA: 3'- -CgCGGCCGG-CGCGaCGCG-GAGgCAcc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 49114 | 0.7 | 0.298644 |
Target: 5'- uGCGCUGGCaGCGCauCGaCC-CCGUGGg -3' miRNA: 3'- -CGCGGCCGgCGCGacGC-GGaGGCACC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 48638 | 0.68 | 0.409198 |
Target: 5'- cGCGaCCGGCCGuUGCcGCGUCUauaaccgcgaUUGUGGu -3' miRNA: 3'- -CGC-GGCCGGC-GCGaCGCGGA----------GGCACC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 47127 | 0.68 | 0.377325 |
Target: 5'- cGCGUCGGCgugaGCGCcgGCGCUUUCGcUGc -3' miRNA: 3'- -CGCGGCCGg---CGCGa-CGCGGAGGC-ACc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 45137 | 0.66 | 0.504805 |
Target: 5'- aGCGacCCGGCCGCGCgaaaUGCGCUggaUCgCGa-- -3' miRNA: 3'- -CGC--GGCCGGCGCG----ACGCGG---AG-GCacc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 44142 | 0.7 | 0.305242 |
Target: 5'- cCGCCGGCCGCGCguuggGCGgCgcgCCa--- -3' miRNA: 3'- cGCGGCCGGCGCGa----CGCgGa--GGcacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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