miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21336 3' -64.8 NC_004778.3 + 1137 0.7 0.285781
Target:  5'- cGCGUuggaGGCCGCuGCUGCGCCgaucgacgCCGa-- -3'
miRNA:   3'- -CGCGg---CCGGCG-CGACGCGGa-------GGCacc -5'
21336 3' -64.8 NC_004778.3 + 6997 0.68 0.385135
Target:  5'- cGCGCCGcCUGCGUccacacaggggGCGCCcgUCGUGGu -3'
miRNA:   3'- -CGCGGCcGGCGCGa----------CGCGGa-GGCACC- -5'
21336 3' -64.8 NC_004778.3 + 8948 0.68 0.388289
Target:  5'- cGCGCCcGCCGCcucgccgcugaagcuGCUGCGCCaaaUGUuGGg -3'
miRNA:   3'- -CGCGGcCGGCG---------------CGACGCGGag-GCA-CC- -5'
21336 3' -64.8 NC_004778.3 + 9035 0.7 0.314666
Target:  5'- gGCGCCGucgcacaaguuaaccGCCGCGCUcgaGCGCCggcucaaugagUCCGUcgacGGa -3'
miRNA:   3'- -CGCGGC---------------CGGCGCGA---CGCGG-----------AGGCA----CC- -5'
21336 3' -64.8 NC_004778.3 + 10721 0.69 0.347166
Target:  5'- -gGuuGGaCCGCuguucGCUGCGCgCUCCGcGGg -3'
miRNA:   3'- cgCggCC-GGCG-----CGACGCG-GAGGCaCC- -5'
21336 3' -64.8 NC_004778.3 + 14542 0.69 0.332037
Target:  5'- cGUGCCGGacgaCCGCGCguccaugUGCGCCagcaUUGUGGa -3'
miRNA:   3'- -CGCGGCC----GGCGCG-------ACGCGGa---GGCACC- -5'
21336 3' -64.8 NC_004778.3 + 17096 0.7 0.304577
Target:  5'- -gGCCGuGUugcugugCGCGCggcGCGCCUaCCGUGGc -3'
miRNA:   3'- cgCGGC-CG-------GCGCGa--CGCGGA-GGCACC- -5'
21336 3' -64.8 NC_004778.3 + 21652 0.67 0.460016
Target:  5'- -gGCCGGCgGUgGCgGCGCCaUCCGg-- -3'
miRNA:   3'- cgCGGCCGgCG-CGaCGCGG-AGGCacc -5'
21336 3' -64.8 NC_004778.3 + 27527 0.67 0.442697
Target:  5'- cGgGCUGGCCGacaCGUUGCGCUUggacugggcuaCCGUGc -3'
miRNA:   3'- -CgCGGCCGGC---GCGACGCGGA-----------GGCACc -5'
21336 3' -64.8 NC_004778.3 + 32276 0.68 0.385135
Target:  5'- aCGCUGGCCG-GCgGCGCCgugUCG-GGc -3'
miRNA:   3'- cGCGGCCGGCgCGaCGCGGa--GGCaCC- -5'
21336 3' -64.8 NC_004778.3 + 33601 0.71 0.261373
Target:  5'- uGCGgaCGGCCGCGCUuuucGCGCCgCCGc-- -3'
miRNA:   3'- -CGCg-GCCGGCGCGA----CGCGGaGGCacc -5'
21336 3' -64.8 NC_004778.3 + 34161 0.68 0.398656
Target:  5'- uCGCCGGCgGCgacaaGCUGCGCagcaugcaggacgugCUGUGGc -3'
miRNA:   3'- cGCGGCCGgCG-----CGACGCGga-------------GGCACC- -5'
21336 3' -64.8 NC_004778.3 + 35139 0.67 0.425751
Target:  5'- uGCuGCCGGCCGaCGCaaauUGCGCgUugcacaCCGUGc -3'
miRNA:   3'- -CG-CGGCCGGC-GCG----ACGCGgA------GGCACc -5'
21336 3' -64.8 NC_004778.3 + 36863 0.68 0.385135
Target:  5'- gGCGCCGGCgGUGC-GCGUCUUgGcGa -3'
miRNA:   3'- -CGCGGCCGgCGCGaCGCGGAGgCaCc -5'
21336 3' -64.8 NC_004778.3 + 38141 0.68 0.409198
Target:  5'- aGCGCaGGCC-CGCUGCGCCgCuCGa-- -3'
miRNA:   3'- -CGCGgCCGGcGCGACGCGGaG-GCacc -5'
21336 3' -64.8 NC_004778.3 + 38452 0.68 0.369622
Target:  5'- gGCGCgCGGUCGCGUgcgcGCuggcgcagaucaGCCUCgaCGUGGa -3'
miRNA:   3'- -CGCG-GCCGGCGCGa---CG------------CGGAG--GCACC- -5'
21336 3' -64.8 NC_004778.3 + 38610 0.72 0.212676
Target:  5'- aGCGCCGGCCGuCGCaaaaaUG-GCUUCCauuGUGGc -3'
miRNA:   3'- -CGCGGCCGGC-GCG-----ACgCGGAGG---CACC- -5'
21336 3' -64.8 NC_004778.3 + 41211 0.67 0.442697
Target:  5'- cGCGCUGGaCgCGCGaCUGCGag-CgGUGGa -3'
miRNA:   3'- -CGCGGCC-G-GCGC-GACGCggaGgCACC- -5'
21336 3' -64.8 NC_004778.3 + 44142 0.7 0.305242
Target:  5'- cCGCCGGCCGCGCguuggGCGgCgcgCCa--- -3'
miRNA:   3'- cGCGGCCGGCGCGa----CGCgGa--GGcacc -5'
21336 3' -64.8 NC_004778.3 + 45137 0.66 0.504805
Target:  5'- aGCGacCCGGCCGCGCgaaaUGCGCUggaUCgCGa-- -3'
miRNA:   3'- -CGC--GGCCGGCGCG----ACGCGG---AG-GCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.