Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21336 | 3' | -64.8 | NC_004778.3 | + | 35139 | 0.67 | 0.425751 |
Target: 5'- uGCuGCCGGCCGaCGCaaauUGCGCgUugcacaCCGUGc -3' miRNA: 3'- -CG-CGGCCGGC-GCG----ACGCGgA------GGCACc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 51277 | 0.67 | 0.424914 |
Target: 5'- cGCGCCGG-CGUGUacgaauuUGCGUUUUCGcUGGa -3' miRNA: 3'- -CGCGGCCgGCGCG-------ACGCGGAGGC-ACC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 65903 | 0.68 | 0.409198 |
Target: 5'- cGC-CCGGCU-CGCUGCGCCaaacgCCGUc- -3' miRNA: 3'- -CGcGGCCGGcGCGACGCGGa----GGCAcc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 48638 | 0.68 | 0.409198 |
Target: 5'- cGCGaCCGGCCGuUGCcGCGUCUauaaccgcgaUUGUGGu -3' miRNA: 3'- -CGC-GGCCGGC-GCGaCGCGGA----------GGCACC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 38141 | 0.68 | 0.409198 |
Target: 5'- aGCGCaGGCC-CGCUGCGCCgCuCGa-- -3' miRNA: 3'- -CGCGgCCGGcGCGACGCGGaG-GCacc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 49389 | 0.68 | 0.409198 |
Target: 5'- gGgGCCGGCCaGCGCcGCGUaCUCgGUa- -3' miRNA: 3'- -CgCGGCCGG-CGCGaCGCG-GAGgCAcc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 81773 | 0.68 | 0.401073 |
Target: 5'- uGCGCCGGUagGUGC-GCGgCCUgCCG-GGg -3' miRNA: 3'- -CGCGGCCGg-CGCGaCGC-GGA-GGCaCC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 34161 | 0.68 | 0.398656 |
Target: 5'- uCGCCGGCgGCgacaaGCUGCGCagcaugcaggacgugCUGUGGc -3' miRNA: 3'- cGCGGCCGgCG-----CGACGCGga-------------GGCACC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 8948 | 0.68 | 0.388289 |
Target: 5'- cGCGCCcGCCGCcucgccgcugaagcuGCUGCGCCaaaUGUuGGg -3' miRNA: 3'- -CGCGGcCGGCG---------------CGACGCGGag-GCA-CC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 6997 | 0.68 | 0.385135 |
Target: 5'- cGCGCCGcCUGCGUccacacaggggGCGCCcgUCGUGGu -3' miRNA: 3'- -CGCGGCcGGCGCGa----------CGCGGa-GGCACC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 36863 | 0.68 | 0.385135 |
Target: 5'- gGCGCCGGCgGUGC-GCGUCUUgGcGa -3' miRNA: 3'- -CGCGGCCGgCGCGaCGCGGAGgCaCc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 32276 | 0.68 | 0.385135 |
Target: 5'- aCGCUGGCCG-GCgGCGCCgugUCG-GGc -3' miRNA: 3'- cGCGGCCGGCgCGaCGCGGa--GGCaCC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 98511 | 0.68 | 0.385135 |
Target: 5'- uGCGcCCGGgCGCGgUGCGCgUCUGc-- -3' miRNA: 3'- -CGC-GGCCgGCGCgACGCGgAGGCacc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 60114 | 0.68 | 0.377325 |
Target: 5'- cGCGCUGGCCGUGUUuaGCC-UgGUGu -3' miRNA: 3'- -CGCGGCCGGCGCGAcgCGGaGgCACc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 47127 | 0.68 | 0.377325 |
Target: 5'- cGCGUCGGCgugaGCGCcgGCGCUUUCGcUGc -3' miRNA: 3'- -CGCGGCCGg---CGCGa-CGCGGAGGC-ACc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 38452 | 0.68 | 0.369622 |
Target: 5'- gGCGCgCGGUCGCGUgcgcGCuggcgcagaucaGCCUCgaCGUGGa -3' miRNA: 3'- -CGCG-GCCGGCGCGa---CG------------CGGAG--GCACC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 98721 | 0.69 | 0.354542 |
Target: 5'- gGCaGCCGGCCGCggccGCaGCGUgCUUCGUGu -3' miRNA: 3'- -CG-CGGCCGGCG----CGaCGCG-GAGGCACc -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 10721 | 0.69 | 0.347166 |
Target: 5'- -gGuuGGaCCGCuguucGCUGCGCgCUCCGcGGg -3' miRNA: 3'- cgCggCC-GGCG-----CGACGCG-GAGGCaCC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 14542 | 0.69 | 0.332037 |
Target: 5'- cGUGCCGGacgaCCGCGCguccaugUGCGCCagcaUUGUGGa -3' miRNA: 3'- -CGCGGCC----GGCGCG-------ACGCGGa---GGCACC- -5' |
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21336 | 3' | -64.8 | NC_004778.3 | + | 51138 | 0.69 | 0.325704 |
Target: 5'- aCGCCGGCgCGCgGCUGaagcacuuugcCGCCUUCGUa- -3' miRNA: 3'- cGCGGCCG-GCG-CGAC-----------GCGGAGGCAcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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