miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21336 5' -54.5 NC_004778.3 + 75901 0.66 0.920348
Target:  5'- -cCAGCG-CCGagGAGCGCGACauuuuGCGAa -3'
miRNA:   3'- uuGUUGCuGGCg-CUCGCGUUG-----UGCUa -5'
21336 5' -54.5 NC_004778.3 + 32824 0.66 0.920348
Target:  5'- cGCAGCuGCCGCGGcGCGUggUGCGu- -3'
miRNA:   3'- uUGUUGcUGGCGCU-CGCGuuGUGCua -5'
21336 5' -54.5 NC_004778.3 + 114316 0.66 0.920348
Target:  5'- uGAUAAUGGCCGCGuGCGCcugcuCGCu-- -3'
miRNA:   3'- -UUGUUGCUGGCGCuCGCGuu---GUGcua -5'
21336 5' -54.5 NC_004778.3 + 14509 0.66 0.920348
Target:  5'- cGGCGACGAgaCCGUGAcGCGCGugcguCACGu- -3'
miRNA:   3'- -UUGUUGCU--GGCGCU-CGCGUu----GUGCua -5'
21336 5' -54.5 NC_004778.3 + 85458 0.66 0.919766
Target:  5'- cGGCGACGGCauggaCGCGGGCGUuugcggcggcgacGGCAUGGa -3'
miRNA:   3'- -UUGUUGCUG-----GCGCUCGCG-------------UUGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 66257 0.66 0.914417
Target:  5'- uACGAUGACgaaGCGuuugcGUGCAACGCGGa -3'
miRNA:   3'- uUGUUGCUGg--CGCu----CGCGUUGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 113926 0.66 0.914417
Target:  5'- cGCucGCGGagaGCGAGCGCGgcggauggcGCACGAUg -3'
miRNA:   3'- uUGu-UGCUgg-CGCUCGCGU---------UGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 98720 0.66 0.914417
Target:  5'- uGGCAGcCGGCCGCGGcCGCAGCGu--- -3'
miRNA:   3'- -UUGUU-GCUGGCGCUcGCGUUGUgcua -5'
21336 5' -54.5 NC_004778.3 + 29328 0.66 0.914417
Target:  5'- gAGCGACGAcCCGUGgcAGCGUcACGCGc- -3'
miRNA:   3'- -UUGUUGCU-GGCGC--UCGCGuUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 38256 0.66 0.914417
Target:  5'- gGACGGCGugCGCGcuAGCGUGcuguuGCGCGu- -3'
miRNA:   3'- -UUGUUGCugGCGC--UCGCGU-----UGUGCua -5'
21336 5' -54.5 NC_004778.3 + 110102 0.66 0.914417
Target:  5'- aAACGGCGugCGCGccgAGCGCuuggGCACc-- -3'
miRNA:   3'- -UUGUUGCugGCGC---UCGCGu---UGUGcua -5'
21336 5' -54.5 NC_004778.3 + 56959 0.66 0.908231
Target:  5'- -uCAACGuguGCCGCG-GCGUgAACACGGc -3'
miRNA:   3'- uuGUUGC---UGGCGCuCGCG-UUGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 85659 0.66 0.908231
Target:  5'- aGACAAUGAgC-CGAG-GCGGCGCGAc -3'
miRNA:   3'- -UUGUUGCUgGcGCUCgCGUUGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 119968 0.66 0.908231
Target:  5'- --uGACGACgCGCaggcaGAGCGCAACcccuACGAUu -3'
miRNA:   3'- uugUUGCUG-GCG-----CUCGCGUUG----UGCUA- -5'
21336 5' -54.5 NC_004778.3 + 34296 0.66 0.901794
Target:  5'- -cCGGCGACCGCGucgucguacGCGCGcUGCGAc -3'
miRNA:   3'- uuGUUGCUGGCGCu--------CGCGUuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 52336 0.66 0.901794
Target:  5'- cGACGcGCGACCGUuugaguuaGAGCGUuuCGCGGa -3'
miRNA:   3'- -UUGU-UGCUGGCG--------CUCGCGuuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 45637 0.66 0.901794
Target:  5'- gGACAGCGACgguccgCGCGAGUugcccgaccGCGGCAgCGAg -3'
miRNA:   3'- -UUGUUGCUG------GCGCUCG---------CGUUGU-GCUa -5'
21336 5' -54.5 NC_004778.3 + 73459 0.66 0.901794
Target:  5'- cGCGGCGccACUGUccGAGCGCGACAUGc- -3'
miRNA:   3'- uUGUUGC--UGGCG--CUCGCGUUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 21433 0.66 0.895106
Target:  5'- -cCAACGACuCGCu-GCGCAuCACGGg -3'
miRNA:   3'- uuGUUGCUG-GCGcuCGCGUuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 43069 0.66 0.895106
Target:  5'- uACAACGACauuuuucuaGaCGAGCGC-GCGCGGc -3'
miRNA:   3'- uUGUUGCUGg--------C-GCUCGCGuUGUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.