miRNA display CGI


Results 1 - 20 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21336 5' -54.5 NC_004778.3 + 95824 1.04 0.006136
Target:  5'- aAACAACGACCGCGAGCGCAACACGAUg -3'
miRNA:   3'- -UUGUUGCUGGCGCUCGCGUUGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 107922 0.8 0.240808
Target:  5'- cGCGACGccgcCCGaCGAGCGCGACGCGGUg -3'
miRNA:   3'- uUGUUGCu---GGC-GCUCGCGUUGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 90560 0.78 0.300235
Target:  5'- uGGCAGCGcucGCCGcCGAGCGCAGCGcCGAUu -3'
miRNA:   3'- -UUGUUGC---UGGC-GCUCGCGUUGU-GCUA- -5'
21336 5' -54.5 NC_004778.3 + 64307 0.75 0.422991
Target:  5'- -uCGGCGGCCaCGGGCGCGACGCGc- -3'
miRNA:   3'- uuGUUGCUGGcGCUCGCGUUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 25886 0.74 0.489677
Target:  5'- cGGC-GCGACCGUGGGCGCuGGCACGc- -3'
miRNA:   3'- -UUGuUGCUGGCGCUCGCG-UUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 39155 0.73 0.550488
Target:  5'- gGACGuuACGACCGCG-GUGCG-CACGAc -3'
miRNA:   3'- -UUGU--UGCUGGCGCuCGCGUuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 43434 0.72 0.591242
Target:  5'- cGACAGCGACCaCGAGCGUugcgacaAGCGCGu- -3'
miRNA:   3'- -UUGUUGCUGGcGCUCGCG-------UUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 43134 0.72 0.602844
Target:  5'- cGACGGCG-CCGCGGcGCGCcGCACGu- -3'
miRNA:   3'- -UUGUUGCuGGCGCU-CGCGuUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 57022 0.72 0.613416
Target:  5'- --aGACGugCGCGAGCGCGuuuuauuuGCGCGu- -3'
miRNA:   3'- uugUUGCugGCGCUCGCGU--------UGUGCua -5'
21336 5' -54.5 NC_004778.3 + 63931 0.71 0.645187
Target:  5'- --aAGCGACUGCGGGUGCugacugaauACGCGAa -3'
miRNA:   3'- uugUUGCUGGCGCUCGCGu--------UGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 29357 0.71 0.655768
Target:  5'- uGCGACuGCCGCGuGCGCGAUugGc- -3'
miRNA:   3'- uUGUUGcUGGCGCuCGCGUUGugCua -5'
21336 5' -54.5 NC_004778.3 + 45481 0.71 0.666327
Target:  5'- cAACAcCGGCgGCGAGCGCAcACAgCGGa -3'
miRNA:   3'- -UUGUuGCUGgCGCUCGCGU-UGU-GCUa -5'
21336 5' -54.5 NC_004778.3 + 36497 0.71 0.666327
Target:  5'- uGCAGCGuGCCGUu-GCGCGACAUGAc -3'
miRNA:   3'- uUGUUGC-UGGCGcuCGCGUUGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 68586 0.71 0.676858
Target:  5'- cGGCGGCGGCgGCGguGGCGCuuaggcgaaaugGACACGGUa -3'
miRNA:   3'- -UUGUUGCUGgCGC--UCGCG------------UUGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 41205 0.71 0.687349
Target:  5'- gGACGcGCGACUGCGAGCGguGgACGc- -3'
miRNA:   3'- -UUGU-UGCUGGCGCUCGCguUgUGCua -5'
21336 5' -54.5 NC_004778.3 + 69807 0.71 0.687349
Target:  5'- ---cGCGACCGCGuGuCGCGACACa-- -3'
miRNA:   3'- uuguUGCUGGCGCuC-GCGUUGUGcua -5'
21336 5' -54.5 NC_004778.3 + 96609 0.71 0.687349
Target:  5'- cGCGGCGGCCGCuAGCGCGAaaaGAa -3'
miRNA:   3'- uUGUUGCUGGCGcUCGCGUUgugCUa -5'
21336 5' -54.5 NC_004778.3 + 70270 0.7 0.718488
Target:  5'- gGACGGCGugCGCGGcCGCGGCAUa-- -3'
miRNA:   3'- -UUGUUGCugGCGCUcGCGUUGUGcua -5'
21336 5' -54.5 NC_004778.3 + 121764 0.7 0.718488
Target:  5'- cGGCGugGACCGCGcGCuGCAGCA-GAa -3'
miRNA:   3'- -UUGUugCUGGCGCuCG-CGUUGUgCUa -5'
21336 5' -54.5 NC_004778.3 + 9591 0.7 0.728723
Target:  5'- aGACGACGGCCGUGuccaacguGCGCGcCACGc- -3'
miRNA:   3'- -UUGUUGCUGGCGCu-------CGCGUuGUGCua -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.