Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21336 | 5' | -54.5 | NC_004778.3 | + | 48971 | 0.69 | 0.778351 |
Target: 5'- uGCGACGAUUGCGAagGCGaUGACGCGGa -3' miRNA: 3'- uUGUUGCUGGCGCU--CGC-GUUGUGCUa -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 124349 | 0.69 | 0.778351 |
Target: 5'- aGGCGGCGACCGCGAagaccggaccgGCGgCGGCugACGGg -3' miRNA: 3'- -UUGUUGCUGGCGCU-----------CGC-GUUG--UGCUa -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 7171 | 0.69 | 0.778351 |
Target: 5'- aGGCuAUGACCGCGAcgauauGCGCGACAaGAUc -3' miRNA: 3'- -UUGuUGCUGGCGCU------CGCGUUGUgCUA- -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 2397 | 0.69 | 0.777389 |
Target: 5'- aAGCGGCGuacguCCGCGGGCGUGACGuuucuguCGAUc -3' miRNA: 3'- -UUGUUGCu----GGCGCUCGCGUUGU-------GCUA- -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 108249 | 0.7 | 0.738869 |
Target: 5'- gAGCAGCG-CCGUGuGCuuGACACGGUa -3' miRNA: 3'- -UUGUUGCuGGCGCuCGcgUUGUGCUA- -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 9591 | 0.7 | 0.728723 |
Target: 5'- aGACGACGGCCGUGuccaacguGCGCGcCACGc- -3' miRNA: 3'- -UUGUUGCUGGCGCu-------CGCGUuGUGCua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 70270 | 0.7 | 0.718488 |
Target: 5'- gGACGGCGugCGCGGcCGCGGCAUa-- -3' miRNA: 3'- -UUGUUGCugGCGCUcGCGUUGUGcua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 121764 | 0.7 | 0.718488 |
Target: 5'- cGGCGugGACCGCGcGCuGCAGCA-GAa -3' miRNA: 3'- -UUGUugCUGGCGCuCG-CGUUGUgCUa -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 41205 | 0.71 | 0.687349 |
Target: 5'- gGACGcGCGACUGCGAGCGguGgACGc- -3' miRNA: 3'- -UUGU-UGCUGGCGCUCGCguUgUGCua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 69807 | 0.71 | 0.687349 |
Target: 5'- ---cGCGACCGCGuGuCGCGACACa-- -3' miRNA: 3'- uuguUGCUGGCGCuC-GCGUUGUGcua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 96609 | 0.71 | 0.687349 |
Target: 5'- cGCGGCGGCCGCuAGCGCGAaaaGAa -3' miRNA: 3'- uUGUUGCUGGCGcUCGCGUUgugCUa -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 68586 | 0.71 | 0.676858 |
Target: 5'- cGGCGGCGGCgGCGguGGCGCuuaggcgaaaugGACACGGUa -3' miRNA: 3'- -UUGUUGCUGgCGC--UCGCG------------UUGUGCUA- -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 45481 | 0.71 | 0.666327 |
Target: 5'- cAACAcCGGCgGCGAGCGCAcACAgCGGa -3' miRNA: 3'- -UUGUuGCUGgCGCUCGCGU-UGU-GCUa -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 36497 | 0.71 | 0.666327 |
Target: 5'- uGCAGCGuGCCGUu-GCGCGACAUGAc -3' miRNA: 3'- uUGUUGC-UGGCGcuCGCGUUGUGCUa -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 29357 | 0.71 | 0.655768 |
Target: 5'- uGCGACuGCCGCGuGCGCGAUugGc- -3' miRNA: 3'- uUGUUGcUGGCGCuCGCGUUGugCua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 63931 | 0.71 | 0.645187 |
Target: 5'- --aAGCGACUGCGGGUGCugacugaauACGCGAa -3' miRNA: 3'- uugUUGCUGGCGCUCGCGu--------UGUGCUa -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 57022 | 0.72 | 0.613416 |
Target: 5'- --aGACGugCGCGAGCGCGuuuuauuuGCGCGu- -3' miRNA: 3'- uugUUGCugGCGCUCGCGU--------UGUGCua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 43134 | 0.72 | 0.602844 |
Target: 5'- cGACGGCG-CCGCGGcGCGCcGCACGu- -3' miRNA: 3'- -UUGUUGCuGGCGCU-CGCGuUGUGCua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 43434 | 0.72 | 0.591242 |
Target: 5'- cGACAGCGACCaCGAGCGUugcgacaAGCGCGu- -3' miRNA: 3'- -UUGUUGCUGGcGCUCGCG-------UUGUGCua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 39155 | 0.73 | 0.550488 |
Target: 5'- gGACGuuACGACCGCG-GUGCG-CACGAc -3' miRNA: 3'- -UUGU--UGCUGGCGCuCGCGUuGUGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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