Results 61 - 65 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21336 | 5' | -54.5 | NC_004778.3 | + | 25886 | 0.74 | 0.489677 |
Target: 5'- cGGC-GCGACCGUGGGCGCuGGCACGc- -3' miRNA: 3'- -UUGuUGCUGGCGCUCGCG-UUGUGCua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 64307 | 0.75 | 0.422991 |
Target: 5'- -uCGGCGGCCaCGGGCGCGACGCGc- -3' miRNA: 3'- uuGUUGCUGGcGCUCGCGUUGUGCua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 90560 | 0.78 | 0.300235 |
Target: 5'- uGGCAGCGcucGCCGcCGAGCGCAGCGcCGAUu -3' miRNA: 3'- -UUGUUGC---UGGC-GCUCGCGUUGU-GCUA- -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 107922 | 0.8 | 0.240808 |
Target: 5'- cGCGACGccgcCCGaCGAGCGCGACGCGGUg -3' miRNA: 3'- uUGUUGCu---GGC-GCUCGCGUUGUGCUA- -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 95824 | 1.04 | 0.006136 |
Target: 5'- aAACAACGACCGCGAGCGCAACACGAUg -3' miRNA: 3'- -UUGUUGCUGGCGCUCGCGUUGUGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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