miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21336 5' -54.5 NC_004778.3 + 1658 0.68 0.806527
Target:  5'- cGGCAGCGccCCGCGGG-GCAACAUGu- -3'
miRNA:   3'- -UUGUUGCu-GGCGCUCgCGUUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 2178 0.68 0.82448
Target:  5'- cGACuACGACCGaGAGCaGCuucGACGCGAUu -3'
miRNA:   3'- -UUGuUGCUGGCgCUCG-CG---UUGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 2397 0.69 0.777389
Target:  5'- aAGCGGCGuacguCCGCGGGCGUGACGuuucuguCGAUc -3'
miRNA:   3'- -UUGUUGCu----GGCGCUCGCGUUGU-------GCUA- -5'
21336 5' -54.5 NC_004778.3 + 5129 0.67 0.873585
Target:  5'- aAACAACGcGCCGUGgcaaugucgcGGCGCAcGCAUGAc -3'
miRNA:   3'- -UUGUUGC-UGGCGC----------UCGCGU-UGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 7171 0.69 0.778351
Target:  5'- aGGCuAUGACCGCGAcgauauGCGCGACAaGAUc -3'
miRNA:   3'- -UUGuUGCUGGCGCU------CGCGUUGUgCUA- -5'
21336 5' -54.5 NC_004778.3 + 8799 0.68 0.841683
Target:  5'- cAGCGGCGagGCgGCGGGCGCGcucaGCGAa -3'
miRNA:   3'- -UUGUUGC--UGgCGCUCGCGUug--UGCUa -5'
21336 5' -54.5 NC_004778.3 + 9591 0.7 0.728723
Target:  5'- aGACGACGGCCGUGuccaacguGCGCGcCACGc- -3'
miRNA:   3'- -UUGUUGCUGGCGCu-------CGCGUuGUGCua -5'
21336 5' -54.5 NC_004778.3 + 14509 0.66 0.920348
Target:  5'- cGGCGACGAgaCCGUGAcGCGCGugcguCACGu- -3'
miRNA:   3'- -UUGUUGCU--GGCGCU-CGCGUu----GUGCua -5'
21336 5' -54.5 NC_004778.3 + 19272 0.68 0.82448
Target:  5'- cGACGACGAguuUCGCGucGUGCAacaGCGCGAUc -3'
miRNA:   3'- -UUGUUGCU---GGCGCu-CGCGU---UGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 21255 0.67 0.849983
Target:  5'- gGGCAACGuccgcuCCGCGGGCuGCAcCGCGc- -3'
miRNA:   3'- -UUGUUGCu-----GGCGCUCG-CGUuGUGCua -5'
21336 5' -54.5 NC_004778.3 + 21433 0.66 0.895106
Target:  5'- -cCAACGACuCGCu-GCGCAuCACGGg -3'
miRNA:   3'- uuGUUGCUG-GCGcuCGCGUuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 25886 0.74 0.489677
Target:  5'- cGGC-GCGACCGUGGGCGCuGGCACGc- -3'
miRNA:   3'- -UUGuUGCUGGCGCUCGCG-UUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 26048 0.66 0.895106
Target:  5'- cAGCGACGAgCGUGccAGCGCc-CACGGUc -3'
miRNA:   3'- -UUGUUGCUgGCGC--UCGCGuuGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 26327 0.67 0.849983
Target:  5'- cACAGCuGCCGCGcaaAGCGCAACuGCGc- -3'
miRNA:   3'- uUGUUGcUGGCGC---UCGCGUUG-UGCua -5'
21336 5' -54.5 NC_004778.3 + 27872 0.67 0.865941
Target:  5'- uGGCAaguuuguacGCGGCgGCGAGUGUGugGCGGc -3'
miRNA:   3'- -UUGU---------UGCUGgCGCUCGCGUugUGCUa -5'
21336 5' -54.5 NC_004778.3 + 27956 0.67 0.849163
Target:  5'- cGACaAGCGGCCcgugcauGCG-GUGCAGCGCGGg -3'
miRNA:   3'- -UUG-UUGCUGG-------CGCuCGCGUUGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 28279 0.68 0.814694
Target:  5'- --aGGCGACgGCGAGCgaccgcuaucgcaGCAGCugGAc -3'
miRNA:   3'- uugUUGCUGgCGCUCG-------------CGUUGugCUa -5'
21336 5' -54.5 NC_004778.3 + 28814 0.68 0.815592
Target:  5'- aAACGccGCGGCCGCGcacauuAGCGCAAucagcucuCGCGAa -3'
miRNA:   3'- -UUGU--UGCUGGCGC------UCGCGUU--------GUGCUa -5'
21336 5' -54.5 NC_004778.3 + 29328 0.66 0.914417
Target:  5'- gAGCGACGAcCCGUGgcAGCGUcACGCGc- -3'
miRNA:   3'- -UUGUUGCU-GGCGC--UCGCGuUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 29357 0.71 0.655768
Target:  5'- uGCGACuGCCGCGuGCGCGAUugGc- -3'
miRNA:   3'- uUGUUGcUGGCGCuCGCGUUGugCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.