miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21336 5' -54.5 NC_004778.3 + 32628 0.68 0.841683
Target:  5'- uGCcACGACCGCuGGUGCAAagGCGAc -3'
miRNA:   3'- uUGuUGCUGGCGcUCGCGUUg-UGCUa -5'
21336 5' -54.5 NC_004778.3 + 32824 0.66 0.920348
Target:  5'- cGCAGCuGCCGCGGcGCGUggUGCGu- -3'
miRNA:   3'- uUGUUGcUGGCGCU-CGCGuuGUGCua -5'
21336 5' -54.5 NC_004778.3 + 34296 0.66 0.901794
Target:  5'- -cCGGCGACCGCGucgucguacGCGCGcUGCGAc -3'
miRNA:   3'- uuGUUGCUGGCGCu--------CGCGUuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 34904 0.67 0.865941
Target:  5'- cAGCGGCGuuauACCGCaAGCGCAugGCa-- -3'
miRNA:   3'- -UUGUUGC----UGGCGcUCGCGUugUGcua -5'
21336 5' -54.5 NC_004778.3 + 36497 0.71 0.666327
Target:  5'- uGCAGCGuGCCGUu-GCGCGACAUGAc -3'
miRNA:   3'- uUGUUGC-UGGCGcuCGCGUUGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 38256 0.66 0.914417
Target:  5'- gGACGGCGugCGCGcuAGCGUGcuguuGCGCGu- -3'
miRNA:   3'- -UUGUUGCugGCGC--UCGCGU-----UGUGCua -5'
21336 5' -54.5 NC_004778.3 + 39155 0.73 0.550488
Target:  5'- gGACGuuACGACCGCG-GUGCG-CACGAc -3'
miRNA:   3'- -UUGU--UGCUGGCGCuCGCGUuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 41205 0.71 0.687349
Target:  5'- gGACGcGCGACUGCGAGCGguGgACGc- -3'
miRNA:   3'- -UUGU-UGCUGGCGCUCGCguUgUGCua -5'
21336 5' -54.5 NC_004778.3 + 43069 0.66 0.895106
Target:  5'- uACAACGACauuuuucuaGaCGAGCGC-GCGCGGc -3'
miRNA:   3'- uUGUUGCUGg--------C-GCUCGCGuUGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 43134 0.72 0.602844
Target:  5'- cGACGGCG-CCGCGGcGCGCcGCACGu- -3'
miRNA:   3'- -UUGUUGCuGGCGCU-CGCGuUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 43434 0.72 0.591242
Target:  5'- cGACAGCGACCaCGAGCGUugcgacaAGCGCGu- -3'
miRNA:   3'- -UUGUUGCUGGcGCUCGCG-------UUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 45481 0.71 0.666327
Target:  5'- cAACAcCGGCgGCGAGCGCAcACAgCGGa -3'
miRNA:   3'- -UUGUuGCUGgCGCUCGCGU-UGU-GCUa -5'
21336 5' -54.5 NC_004778.3 + 45637 0.66 0.901794
Target:  5'- gGACAGCGACgguccgCGCGAGUugcccgaccGCGGCAgCGAg -3'
miRNA:   3'- -UUGUUGCUG------GCGCUCG---------CGUUGU-GCUa -5'
21336 5' -54.5 NC_004778.3 + 48971 0.69 0.778351
Target:  5'- uGCGACGAUUGCGAagGCGaUGACGCGGa -3'
miRNA:   3'- uUGUUGCUGGCGCU--CGC-GUUGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 52336 0.66 0.901794
Target:  5'- cGACGcGCGACCGUuugaguuaGAGCGUuuCGCGGa -3'
miRNA:   3'- -UUGU-UGCUGGCG--------CUCGCGuuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 56959 0.66 0.908231
Target:  5'- -uCAACGuguGCCGCG-GCGUgAACACGGc -3'
miRNA:   3'- uuGUUGC---UGGCGCuCGCG-UUGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 57022 0.72 0.613416
Target:  5'- --aGACGugCGCGAGCGCGuuuuauuuGCGCGu- -3'
miRNA:   3'- uugUUGCugGCGCUCGCGU--------UGUGCua -5'
21336 5' -54.5 NC_004778.3 + 61520 0.67 0.880997
Target:  5'- cAGCGACGACgCGCcGGCGCcguccgcACAUGAa -3'
miRNA:   3'- -UUGUUGCUG-GCGcUCGCGu------UGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 62002 0.66 0.895106
Target:  5'- uAGCAGCGcAgUGCGAGaCGCucACGCGGUu -3'
miRNA:   3'- -UUGUUGC-UgGCGCUC-GCGu-UGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 63931 0.71 0.645187
Target:  5'- --aAGCGACUGCGGGUGCugacugaauACGCGAa -3'
miRNA:   3'- uugUUGCUGGCGCUCGCGu--------UGUGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.