miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21336 5' -54.5 NC_004778.3 + 73459 0.66 0.901794
Target:  5'- cGCGGCGccACUGUccGAGCGCGACAUGc- -3'
miRNA:   3'- uUGUUGC--UGGCG--CUCGCGUUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 28814 0.68 0.815592
Target:  5'- aAACGccGCGGCCGCGcacauuAGCGCAAucagcucuCGCGAa -3'
miRNA:   3'- -UUGU--UGCUGGCGC------UCGCGUU--------GUGCUa -5'
21336 5' -54.5 NC_004778.3 + 19272 0.68 0.82448
Target:  5'- cGACGACGAguuUCGCGucGUGCAacaGCGCGAUc -3'
miRNA:   3'- -UUGUUGCU---GGCGCu-CGCGU---UGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 8799 0.68 0.841683
Target:  5'- cAGCGGCGagGCgGCGGGCGCGcucaGCGAa -3'
miRNA:   3'- -UUGUUGC--UGgCGCUCGCGUug--UGCUa -5'
21336 5' -54.5 NC_004778.3 + 26327 0.67 0.849983
Target:  5'- cACAGCuGCCGCGcaaAGCGCAACuGCGc- -3'
miRNA:   3'- uUGUUGcUGGCGC---UCGCGUUG-UGCua -5'
21336 5' -54.5 NC_004778.3 + 114775 0.67 0.858071
Target:  5'- --uGAUGACUGCGGcguGaCGCAACAUGAUa -3'
miRNA:   3'- uugUUGCUGGCGCU---C-GCGUUGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 27872 0.67 0.865941
Target:  5'- uGGCAaguuuguacGCGGCgGCGAGUGUGugGCGGc -3'
miRNA:   3'- -UUGU---------UGCUGgCGCUCGCGUugUGCUa -5'
21336 5' -54.5 NC_004778.3 + 34904 0.67 0.865941
Target:  5'- cAGCGGCGuuauACCGCaAGCGCAugGCa-- -3'
miRNA:   3'- -UUGUUGC----UGGCGcUCGCGUugUGcua -5'
21336 5' -54.5 NC_004778.3 + 43069 0.66 0.895106
Target:  5'- uACAACGACauuuuucuaGaCGAGCGC-GCGCGGc -3'
miRNA:   3'- uUGUUGCUGg--------C-GCUCGCGuUGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 28279 0.68 0.814694
Target:  5'- --aGGCGACgGCGAGCgaccgcuaucgcaGCAGCugGAc -3'
miRNA:   3'- uugUUGCUGgCGCUCG-------------CGUUGugCUa -5'
21336 5' -54.5 NC_004778.3 + 124349 0.69 0.778351
Target:  5'- aGGCGGCGACCGCGAagaccggaccgGCGgCGGCugACGGg -3'
miRNA:   3'- -UUGUUGCUGGCGCU-----------CGC-GUUG--UGCUa -5'
21336 5' -54.5 NC_004778.3 + 70270 0.7 0.718488
Target:  5'- gGACGGCGugCGCGGcCGCGGCAUa-- -3'
miRNA:   3'- -UUGUUGCugGCGCUcGCGUUGUGcua -5'
21336 5' -54.5 NC_004778.3 + 90560 0.78 0.300235
Target:  5'- uGGCAGCGcucGCCGcCGAGCGCAGCGcCGAUu -3'
miRNA:   3'- -UUGUUGC---UGGC-GCUCGCGUUGU-GCUA- -5'
21336 5' -54.5 NC_004778.3 + 25886 0.74 0.489677
Target:  5'- cGGC-GCGACCGUGGGCGCuGGCACGc- -3'
miRNA:   3'- -UUGuUGCUGGCGCUCGCG-UUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 39155 0.73 0.550488
Target:  5'- gGACGuuACGACCGCG-GUGCG-CACGAc -3'
miRNA:   3'- -UUGU--UGCUGGCGCuCGCGUuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 43434 0.72 0.591242
Target:  5'- cGACAGCGACCaCGAGCGUugcgacaAGCGCGu- -3'
miRNA:   3'- -UUGUUGCUGGcGCUCGCG-------UUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 43134 0.72 0.602844
Target:  5'- cGACGGCG-CCGCGGcGCGCcGCACGu- -3'
miRNA:   3'- -UUGUUGCuGGCGCU-CGCGuUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 63931 0.71 0.645187
Target:  5'- --aAGCGACUGCGGGUGCugacugaauACGCGAa -3'
miRNA:   3'- uugUUGCUGGCGCUCGCGu--------UGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 96609 0.71 0.687349
Target:  5'- cGCGGCGGCCGCuAGCGCGAaaaGAa -3'
miRNA:   3'- uUGUUGCUGGCGcUCGCGUUgugCUa -5'
21336 5' -54.5 NC_004778.3 + 69807 0.71 0.687349
Target:  5'- ---cGCGACCGCGuGuCGCGACACa-- -3'
miRNA:   3'- uuguUGCUGGCGCuC-GCGUUGUGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.