miRNA display CGI


Results 21 - 40 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21336 5' -54.5 NC_004778.3 + 43434 0.72 0.591242
Target:  5'- cGACAGCGACCaCGAGCGUugcgacaAGCGCGu- -3'
miRNA:   3'- -UUGUUGCUGGcGCUCGCG-------UUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 43134 0.72 0.602844
Target:  5'- cGACGGCG-CCGCGGcGCGCcGCACGu- -3'
miRNA:   3'- -UUGUUGCuGGCGCU-CGCGuUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 63931 0.71 0.645187
Target:  5'- --aAGCGACUGCGGGUGCugacugaauACGCGAa -3'
miRNA:   3'- uugUUGCUGGCGCUCGCGu--------UGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 96609 0.71 0.687349
Target:  5'- cGCGGCGGCCGCuAGCGCGAaaaGAa -3'
miRNA:   3'- uUGUUGCUGGCGcUCGCGUUgugCUa -5'
21336 5' -54.5 NC_004778.3 + 19272 0.68 0.82448
Target:  5'- cGACGACGAguuUCGCGucGUGCAacaGCGCGAUc -3'
miRNA:   3'- -UUGUUGCU---GGCGCu-CGCGU---UGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 28814 0.68 0.815592
Target:  5'- aAACGccGCGGCCGCGcacauuAGCGCAAucagcucuCGCGAa -3'
miRNA:   3'- -UUGU--UGCUGGCGC------UCGCGUU--------GUGCUa -5'
21336 5' -54.5 NC_004778.3 + 28279 0.68 0.814694
Target:  5'- --aGGCGACgGCGAGCgaccgcuaucgcaGCAGCugGAc -3'
miRNA:   3'- uugUUGCUGgCGCUCG-------------CGUUGugCUa -5'
21336 5' -54.5 NC_004778.3 + 124349 0.69 0.778351
Target:  5'- aGGCGGCGACCGCGAagaccggaccgGCGgCGGCugACGGg -3'
miRNA:   3'- -UUGUUGCUGGCGCU-----------CGC-GUUG--UGCUa -5'
21336 5' -54.5 NC_004778.3 + 70270 0.7 0.718488
Target:  5'- gGACGGCGugCGCGGcCGCGGCAUa-- -3'
miRNA:   3'- -UUGUUGCugGCGCUcGCGUUGUGcua -5'
21336 5' -54.5 NC_004778.3 + 69807 0.71 0.687349
Target:  5'- ---cGCGACCGCGuGuCGCGACACa-- -3'
miRNA:   3'- uuguUGCUGGCGCuC-GCGUUGUGcua -5'
21336 5' -54.5 NC_004778.3 + 26048 0.66 0.895106
Target:  5'- cAGCGACGAgCGUGccAGCGCc-CACGGUc -3'
miRNA:   3'- -UUGUUGCUgGCGC--UCGCGuuGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 21433 0.66 0.895106
Target:  5'- -cCAACGACuCGCu-GCGCAuCACGGg -3'
miRNA:   3'- uuGUUGCUG-GCGcuCGCGUuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 34296 0.66 0.901794
Target:  5'- -cCGGCGACCGCGucgucguacGCGCGcUGCGAc -3'
miRNA:   3'- uuGUUGCUGGCGCu--------CGCGUuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 52336 0.66 0.901794
Target:  5'- cGACGcGCGACCGUuugaguuaGAGCGUuuCGCGGa -3'
miRNA:   3'- -UUGU-UGCUGGCG--------CUCGCGuuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 45637 0.66 0.901794
Target:  5'- gGACAGCGACgguccgCGCGAGUugcccgaccGCGGCAgCGAg -3'
miRNA:   3'- -UUGUUGCUG------GCGCUCG---------CGUUGU-GCUa -5'
21336 5' -54.5 NC_004778.3 + 38256 0.66 0.914417
Target:  5'- gGACGGCGugCGCGcuAGCGUGcuguuGCGCGu- -3'
miRNA:   3'- -UUGUUGCugGCGC--UCGCGU-----UGUGCua -5'
21336 5' -54.5 NC_004778.3 + 29328 0.66 0.914417
Target:  5'- gAGCGACGAcCCGUGgcAGCGUcACGCGc- -3'
miRNA:   3'- -UUGUUGCU-GGCGC--UCGCGuUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 85458 0.66 0.919766
Target:  5'- cGGCGACGGCauggaCGCGGGCGUuugcggcggcgacGGCAUGGa -3'
miRNA:   3'- -UUGUUGCUG-----GCGCUCGCG-------------UUGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 75901 0.66 0.920348
Target:  5'- -cCAGCG-CCGagGAGCGCGACauuuuGCGAa -3'
miRNA:   3'- uuGUUGCuGGCg-CUCGCGUUG-----UGCUa -5'
21336 5' -54.5 NC_004778.3 + 107922 0.8 0.240808
Target:  5'- cGCGACGccgcCCGaCGAGCGCGACGCGGUg -3'
miRNA:   3'- uUGUUGCu---GGC-GCUCGCGUUGUGCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.