miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21336 5' -54.5 NC_004778.3 + 41205 0.71 0.687349
Target:  5'- gGACGcGCGACUGCGAGCGguGgACGc- -3'
miRNA:   3'- -UUGU-UGCUGGCGCUCGCguUgUGCua -5'
21336 5' -54.5 NC_004778.3 + 68586 0.71 0.676858
Target:  5'- cGGCGGCGGCgGCGguGGCGCuuaggcgaaaugGACACGGUa -3'
miRNA:   3'- -UUGUUGCUGgCGC--UCGCG------------UUGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 45481 0.71 0.666327
Target:  5'- cAACAcCGGCgGCGAGCGCAcACAgCGGa -3'
miRNA:   3'- -UUGUuGCUGgCGCUCGCGU-UGU-GCUa -5'
21336 5' -54.5 NC_004778.3 + 36497 0.71 0.666327
Target:  5'- uGCAGCGuGCCGUu-GCGCGACAUGAc -3'
miRNA:   3'- uUGUUGC-UGGCGcuCGCGUUGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 74978 0.67 0.849983
Target:  5'- -cCAcCGACUaCGGGCGCAAgGCGGUg -3'
miRNA:   3'- uuGUuGCUGGcGCUCGCGUUgUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 21255 0.67 0.849983
Target:  5'- gGGCAACGuccgcuCCGCGGGCuGCAcCGCGc- -3'
miRNA:   3'- -UUGUUGCu-----GGCGCUCG-CGUuGUGCua -5'
21336 5' -54.5 NC_004778.3 + 75792 0.67 0.858071
Target:  5'- cGCAGCGugCaaguuggacgcGCGAGUGCGGCucaACGAUu -3'
miRNA:   3'- uUGUUGCugG-----------CGCUCGCGUUG---UGCUA- -5'
21336 5' -54.5 NC_004778.3 + 75901 0.66 0.920348
Target:  5'- -cCAGCG-CCGagGAGCGCGACauuuuGCGAa -3'
miRNA:   3'- uuGUUGCuGGCg-CUCGCGUUG-----UGCUa -5'
21336 5' -54.5 NC_004778.3 + 85458 0.66 0.919766
Target:  5'- cGGCGACGGCauggaCGCGGGCGUuugcggcggcgacGGCAUGGa -3'
miRNA:   3'- -UUGUUGCUG-----GCGCUCGCG-------------UUGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 29328 0.66 0.914417
Target:  5'- gAGCGACGAcCCGUGgcAGCGUcACGCGc- -3'
miRNA:   3'- -UUGUUGCU-GGCGC--UCGCGuUGUGCua -5'
21336 5' -54.5 NC_004778.3 + 38256 0.66 0.914417
Target:  5'- gGACGGCGugCGCGcuAGCGUGcuguuGCGCGu- -3'
miRNA:   3'- -UUGUUGCugGCGC--UCGCGU-----UGUGCua -5'
21336 5' -54.5 NC_004778.3 + 45637 0.66 0.901794
Target:  5'- gGACAGCGACgguccgCGCGAGUugcccgaccGCGGCAgCGAg -3'
miRNA:   3'- -UUGUUGCUG------GCGCUCG---------CGUUGU-GCUa -5'
21336 5' -54.5 NC_004778.3 + 52336 0.66 0.901794
Target:  5'- cGACGcGCGACCGUuugaguuaGAGCGUuuCGCGGa -3'
miRNA:   3'- -UUGU-UGCUGGCG--------CUCGCGuuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 34296 0.66 0.901794
Target:  5'- -cCGGCGACCGCGucgucguacGCGCGcUGCGAc -3'
miRNA:   3'- uuGUUGCUGGCGCu--------CGCGUuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 21433 0.66 0.895106
Target:  5'- -cCAACGACuCGCu-GCGCAuCACGGg -3'
miRNA:   3'- uuGUUGCUG-GCGcuCGCGUuGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 26048 0.66 0.895106
Target:  5'- cAGCGACGAgCGUGccAGCGCc-CACGGUc -3'
miRNA:   3'- -UUGUUGCUgGCGC--UCGCGuuGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 62002 0.66 0.895106
Target:  5'- uAGCAGCGcAgUGCGAGaCGCucACGCGGUu -3'
miRNA:   3'- -UUGUUGC-UgGCGCUC-GCGu-UGUGCUA- -5'
21336 5' -54.5 NC_004778.3 + 61520 0.67 0.880997
Target:  5'- cAGCGACGACgCGCcGGCGCcguccgcACAUGAa -3'
miRNA:   3'- -UUGUUGCUG-GCGcUCGCGu------UGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 5129 0.67 0.873585
Target:  5'- aAACAACGcGCCGUGgcaaugucgcGGCGCAcGCAUGAc -3'
miRNA:   3'- -UUGUUGC-UGGCGC----------UCGCGU-UGUGCUa -5'
21336 5' -54.5 NC_004778.3 + 118930 0.67 0.873585
Target:  5'- cGCGcCGGCCGCGccgcgcccgaAGCGUGGCACGu- -3'
miRNA:   3'- uUGUuGCUGGCGC----------UCGCGUUGUGCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.