Results 41 - 60 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21336 | 5' | -54.5 | NC_004778.3 | + | 70270 | 0.7 | 0.718488 |
Target: 5'- gGACGGCGugCGCGGcCGCGGCAUa-- -3' miRNA: 3'- -UUGUUGCugGCGCUcGCGUUGUGcua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 69807 | 0.71 | 0.687349 |
Target: 5'- ---cGCGACCGCGuGuCGCGACACa-- -3' miRNA: 3'- uuguUGCUGGCGCuC-GCGUUGUGcua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 63931 | 0.71 | 0.645187 |
Target: 5'- --aAGCGACUGCGGGUGCugacugaauACGCGAa -3' miRNA: 3'- uugUUGCUGGCGCUCGCGu--------UGUGCUa -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 25886 | 0.74 | 0.489677 |
Target: 5'- cGGC-GCGACCGUGGGCGCuGGCACGc- -3' miRNA: 3'- -UUGuUGCUGGCGCUCGCG-UUGUGCua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 43134 | 0.72 | 0.602844 |
Target: 5'- cGACGGCG-CCGCGGcGCGCcGCACGu- -3' miRNA: 3'- -UUGUUGCuGGCGCU-CGCGuUGUGCua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 8799 | 0.68 | 0.841683 |
Target: 5'- cAGCGGCGagGCgGCGGGCGCGcucaGCGAa -3' miRNA: 3'- -UUGUUGC--UGgCGCUCGCGUug--UGCUa -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 26327 | 0.67 | 0.849983 |
Target: 5'- cACAGCuGCCGCGcaaAGCGCAACuGCGc- -3' miRNA: 3'- uUGUUGcUGGCGC---UCGCGUUG-UGCua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 14509 | 0.66 | 0.920348 |
Target: 5'- cGGCGACGAgaCCGUGAcGCGCGugcguCACGu- -3' miRNA: 3'- -UUGUUGCU--GGCGCU-CGCGUu----GUGCua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 113926 | 0.66 | 0.914417 |
Target: 5'- cGCucGCGGagaGCGAGCGCGgcggauggcGCACGAUg -3' miRNA: 3'- uUGu-UGCUgg-CGCUCGCGU---------UGUGCUA- -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 110102 | 0.66 | 0.914417 |
Target: 5'- aAACGGCGugCGCGccgAGCGCuuggGCACc-- -3' miRNA: 3'- -UUGUUGCugGCGC---UCGCGu---UGUGcua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 66257 | 0.66 | 0.914417 |
Target: 5'- uACGAUGACgaaGCGuuugcGUGCAACGCGGa -3' miRNA: 3'- uUGUUGCUGg--CGCu----CGCGUUGUGCUa -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 98720 | 0.66 | 0.914417 |
Target: 5'- uGGCAGcCGGCCGCGGcCGCAGCGu--- -3' miRNA: 3'- -UUGUU-GCUGGCGCUcGCGUUGUgcua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 85659 | 0.66 | 0.908231 |
Target: 5'- aGACAAUGAgC-CGAG-GCGGCGCGAc -3' miRNA: 3'- -UUGUUGCUgGcGCUCgCGUUGUGCUa -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 119968 | 0.66 | 0.908231 |
Target: 5'- --uGACGACgCGCaggcaGAGCGCAACcccuACGAUu -3' miRNA: 3'- uugUUGCUG-GCG-----CUCGCGUUG----UGCUA- -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 56959 | 0.66 | 0.908231 |
Target: 5'- -uCAACGuguGCCGCG-GCGUgAACACGGc -3' miRNA: 3'- uuGUUGC---UGGCGCuCGCG-UUGUGCUa -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 73459 | 0.66 | 0.901794 |
Target: 5'- cGCGGCGccACUGUccGAGCGCGACAUGc- -3' miRNA: 3'- uUGUUGC--UGGCG--CUCGCGUUGUGCua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 43069 | 0.66 | 0.895106 |
Target: 5'- uACAACGACauuuuucuaGaCGAGCGC-GCGCGGc -3' miRNA: 3'- uUGUUGCUGg--------C-GCUCGCGuUGUGCUa -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 34904 | 0.67 | 0.865941 |
Target: 5'- cAGCGGCGuuauACCGCaAGCGCAugGCa-- -3' miRNA: 3'- -UUGUUGC----UGGCGcUCGCGUugUGcua -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 27872 | 0.67 | 0.865941 |
Target: 5'- uGGCAaguuuguacGCGGCgGCGAGUGUGugGCGGc -3' miRNA: 3'- -UUGU---------UGCUGgCGCUCGCGUugUGCUa -5' |
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21336 | 5' | -54.5 | NC_004778.3 | + | 114775 | 0.67 | 0.858071 |
Target: 5'- --uGAUGACUGCGGcguGaCGCAACAUGAUa -3' miRNA: 3'- uugUUGCUGGCGCU---C-GCGUUGUGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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