Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21337 | 3' | -52.1 | NC_004778.3 | + | 105641 | 0.67 | 0.95169 |
Target: 5'- aGC-GCGUGCUUgGUGggGUAcuuGguGUa -3' miRNA: 3'- gCGuCGCACGAAgCACaaCAU---CguCG- -5' |
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21337 | 3' | -52.1 | NC_004778.3 | + | 112446 | 0.67 | 0.95169 |
Target: 5'- cCGCAGCGUGUaaUCGauaagGaUGU-GCGGCa -3' miRNA: 3'- -GCGUCGCACGa-AGCa----CaACAuCGUCG- -5' |
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21337 | 3' | -52.1 | NC_004778.3 | + | 115214 | 0.68 | 0.932655 |
Target: 5'- aCuaAGCGaUGCUuucgCGUGUUGUgccaaagugauuAGCGGCu -3' miRNA: 3'- -GcgUCGC-ACGAa---GCACAACA------------UCGUCG- -5' |
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21337 | 3' | -52.1 | NC_004778.3 | + | 117065 | 0.7 | 0.87477 |
Target: 5'- aGCAGCGUGUUUUGcacccagggGUUGaggucgcGCAGCg -3' miRNA: 3'- gCGUCGCACGAAGCa--------CAACau-----CGUCG- -5' |
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21337 | 3' | -52.1 | NC_004778.3 | + | 121701 | 0.68 | 0.9378 |
Target: 5'- gGcCGGCGUGgg-CGUGUUGcuggccGGCGGCg -3' miRNA: 3'- gC-GUCGCACgaaGCACAACa-----UCGUCG- -5' |
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21337 | 3' | -52.1 | NC_004778.3 | + | 124374 | 0.67 | 0.95169 |
Target: 5'- gGCGGCG-GCUgacggggGUGUUGgcguuaauuUGGCGGCu -3' miRNA: 3'- gCGUCGCaCGAag-----CACAAC---------AUCGUCG- -5' |
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21337 | 3' | -52.1 | NC_004778.3 | + | 128313 | 0.71 | 0.788628 |
Target: 5'- gGCGGCGUGUacgUUUGUGgcgacgugUGUAGCuGUg -3' miRNA: 3'- gCGUCGCACG---AAGCACa-------ACAUCGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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