miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21337 3' -52.1 NC_004778.3 + 105641 0.67 0.95169
Target:  5'- aGC-GCGUGCUUgGUGggGUAcuuGguGUa -3'
miRNA:   3'- gCGuCGCACGAAgCACaaCAU---CguCG- -5'
21337 3' -52.1 NC_004778.3 + 112446 0.67 0.95169
Target:  5'- cCGCAGCGUGUaaUCGauaagGaUGU-GCGGCa -3'
miRNA:   3'- -GCGUCGCACGa-AGCa----CaACAuCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 115214 0.68 0.932655
Target:  5'- aCuaAGCGaUGCUuucgCGUGUUGUgccaaagugauuAGCGGCu -3'
miRNA:   3'- -GcgUCGC-ACGAa---GCACAACA------------UCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 117065 0.7 0.87477
Target:  5'- aGCAGCGUGUUUUGcacccagggGUUGaggucgcGCAGCg -3'
miRNA:   3'- gCGUCGCACGAAGCa--------CAACau-----CGUCG- -5'
21337 3' -52.1 NC_004778.3 + 121701 0.68 0.9378
Target:  5'- gGcCGGCGUGgg-CGUGUUGcuggccGGCGGCg -3'
miRNA:   3'- gC-GUCGCACgaaGCACAACa-----UCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 124374 0.67 0.95169
Target:  5'- gGCGGCG-GCUgacggggGUGUUGgcguuaauuUGGCGGCu -3'
miRNA:   3'- gCGUCGCaCGAag-----CACAAC---------AUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 128313 0.71 0.788628
Target:  5'- gGCGGCGUGUacgUUUGUGgcgacgugUGUAGCuGUg -3'
miRNA:   3'- gCGUCGCACG---AAGCACa-------ACAUCGuCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.