miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21337 3' -52.1 NC_004778.3 + 98736 1.14 0.002691
Target:  5'- cCGCAGCGUGCUUCGUGUUGUAGCAGCg -3'
miRNA:   3'- -GCGUCGCACGAAGCACAACAUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 27884 0.76 0.549371
Target:  5'- aCGCGGCG-GCga-GUG-UGUGGCGGCc -3'
miRNA:   3'- -GCGUCGCaCGaagCACaACAUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 34594 0.76 0.559829
Target:  5'- gCGCAGCGUGCc-CGUGUac-AGCAGUa -3'
miRNA:   3'- -GCGUCGCACGaaGCACAacaUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 53206 0.74 0.666124
Target:  5'- gGCGGCGguUGCUgcggCGgcgGUugcUGUGGCGGCg -3'
miRNA:   3'- gCGUCGC--ACGAa---GCa--CA---ACAUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 53281 0.74 0.666124
Target:  5'- gGCGGCGguUGCUguggCGgcgGUugcUGUGGCGGCg -3'
miRNA:   3'- gCGUCGC--ACGAa---GCa--CA---ACAUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 128313 0.71 0.788628
Target:  5'- gGCGGCGUGUacgUUUGUGgcgacgugUGUAGCuGUg -3'
miRNA:   3'- gCGUCGCACG---AAGCACa-------ACAUCGuCG- -5'
21337 3' -52.1 NC_004778.3 + 317 0.71 0.798086
Target:  5'- aGC-GCGUGCUggCGcaagaauUUGUAGCAGCg -3'
miRNA:   3'- gCGuCGCACGAa-GCac-----AACAUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 24856 0.7 0.842737
Target:  5'- ---cGUGUGCUUCGUGccgugcgggcaUGUGGUAGCg -3'
miRNA:   3'- gcguCGCACGAAGCACa----------ACAUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 48696 0.7 0.8671
Target:  5'- uGCGGUuucUGUUaucgugCGUGUUGUAGUAGCc -3'
miRNA:   3'- gCGUCGc--ACGAa-----GCACAACAUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 31729 0.7 0.8671
Target:  5'- gCGCGGCGcGCUUUaUGgaGUuuaAGCGGCg -3'
miRNA:   3'- -GCGUCGCaCGAAGcACaaCA---UCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 117065 0.7 0.87477
Target:  5'- aGCAGCGUGUUUUGcacccagggGUUGaggucgcGCAGCg -3'
miRNA:   3'- gCGUCGCACGAAGCa--------CAACau-----CGUCG- -5'
21337 3' -52.1 NC_004778.3 + 100393 0.69 0.896342
Target:  5'- -aCGGCGUGaucCGUGUUGUA-CAGCu -3'
miRNA:   3'- gcGUCGCACgaaGCACAACAUcGUCG- -5'
21337 3' -52.1 NC_004778.3 + 115214 0.68 0.932655
Target:  5'- aCuaAGCGaUGCUuucgCGUGUUGUgccaaagugauuAGCGGCu -3'
miRNA:   3'- -GcgUCGC-ACGAa---GCACAACA------------UCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 103132 0.68 0.932655
Target:  5'- aGCAGU-UGC-UCGUGUgc-GGCGGCg -3'
miRNA:   3'- gCGUCGcACGaAGCACAacaUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 41252 0.68 0.9378
Target:  5'- aGCuGCGUGCUgcacaaaugcgUCGUGguggUGUugGGCAccGCg -3'
miRNA:   3'- gCGuCGCACGA-----------AGCACa---ACA--UCGU--CG- -5'
21337 3' -52.1 NC_004778.3 + 121701 0.68 0.9378
Target:  5'- gGcCGGCGUGgg-CGUGUUGcuggccGGCGGCg -3'
miRNA:   3'- gC-GUCGCACgaaGCACAACa-----UCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 104005 0.67 0.947315
Target:  5'- cCGUGGCGUGUgggugUUCGgcaaggaGUUGgugaAGCGGCa -3'
miRNA:   3'- -GCGUCGCACG-----AAGCa------CAACa---UCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 82596 0.67 0.947315
Target:  5'- -uUAGCGUGUa--GUGUUGgaugaGGCGGCg -3'
miRNA:   3'- gcGUCGCACGaagCACAACa----UCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 38256 0.67 0.949095
Target:  5'- gGaCGGCGUGCgcgcuagCGUGcUGUugcgcgucgcgccgcAGCGGCa -3'
miRNA:   3'- gC-GUCGCACGaa-----GCACaACA---------------UCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 112446 0.67 0.95169
Target:  5'- cCGCAGCGUGUaaUCGauaagGaUGU-GCGGCa -3'
miRNA:   3'- -GCGUCGCACGa-AGCa----CaACAuCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.