miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21337 3' -52.1 NC_004778.3 + 317 0.71 0.798086
Target:  5'- aGC-GCGUGCUggCGcaagaauUUGUAGCAGCg -3'
miRNA:   3'- gCGuCGCACGAa-GCac-----AACAUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 128313 0.71 0.788628
Target:  5'- gGCGGCGUGUacgUUUGUGgcgacgugUGUAGCuGUg -3'
miRNA:   3'- gCGUCGCACG---AAGCACa-------ACAUCGuCG- -5'
21337 3' -52.1 NC_004778.3 + 53281 0.74 0.666124
Target:  5'- gGCGGCGguUGCUguggCGgcgGUugcUGUGGCGGCg -3'
miRNA:   3'- gCGUCGC--ACGAa---GCa--CA---ACAUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 53206 0.74 0.666124
Target:  5'- gGCGGCGguUGCUgcggCGgcgGUugcUGUGGCGGCg -3'
miRNA:   3'- gCGUCGC--ACGAa---GCa--CA---ACAUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 34594 0.76 0.559829
Target:  5'- gCGCAGCGUGCc-CGUGUac-AGCAGUa -3'
miRNA:   3'- -GCGUCGCACGaaGCACAacaUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 27884 0.76 0.549371
Target:  5'- aCGCGGCG-GCga-GUG-UGUGGCGGCc -3'
miRNA:   3'- -GCGUCGCaCGaagCACaACAUCGUCG- -5'
21337 3' -52.1 NC_004778.3 + 98736 1.14 0.002691
Target:  5'- cCGCAGCGUGCUUCGUGUUGUAGCAGCg -3'
miRNA:   3'- -GCGUCGCACGAAGCACAACAUCGUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.