miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21337 5' -62 NC_004778.3 + 98770 1.06 0.000968
Target:  5'- cAAGCCGCCACCAUCCCCAGCGACGCGa -3'
miRNA:   3'- -UUCGGCGGUGGUAGGGGUCGCUGCGC- -5'
21337 5' -62 NC_004778.3 + 68465 0.73 0.239775
Target:  5'- -cGCCGCCGCCG-CCgCCGGCGuuGCc -3'
miRNA:   3'- uuCGGCGGUGGUaGG-GGUCGCugCGc -5'
21337 5' -62 NC_004778.3 + 206 0.72 0.251369
Target:  5'- cAGCCGCCGCCuuuuuUCgCCAGgcUGAUGCGg -3'
miRNA:   3'- uUCGGCGGUGGu----AGgGGUC--GCUGCGC- -5'
21337 5' -62 NC_004778.3 + 29496 0.72 0.269621
Target:  5'- cAGCCGCUugGCgCA-CCCCAGCG-CGCGc -3'
miRNA:   3'- uUCGGCGG--UG-GUaGGGGUCGCuGCGC- -5'
21337 5' -62 NC_004778.3 + 2048 0.71 0.288926
Target:  5'- cGGCCGCCACCGcagccgcguUCCUCAuuGUGGgGCGg -3'
miRNA:   3'- uUCGGCGGUGGU---------AGGGGU--CGCUgCGC- -5'
21337 5' -62 NC_004778.3 + 128178 0.7 0.338141
Target:  5'- -cGCCGCCGUCGUCCCCAcaaGCGcagauauacACGCa -3'
miRNA:   3'- uuCGGCGGUGGUAGGGGU---CGC---------UGCGc -5'
21337 5' -62 NC_004778.3 + 75309 0.7 0.345651
Target:  5'- cAAGCUGCgGCCAgugagcccgCCCCGGCGGC-Ca -3'
miRNA:   3'- -UUCGGCGgUGGUa--------GGGGUCGCUGcGc -5'
21337 5' -62 NC_004778.3 + 6995 0.7 0.345651
Target:  5'- -cGCCGCCugCGUCCaCacaGGgGGCGCc -3'
miRNA:   3'- uuCGGCGGugGUAGG-Gg--UCgCUGCGc -5'
21337 5' -62 NC_004778.3 + 115083 0.7 0.361025
Target:  5'- -uGCUGUCACCAcuUCgUCAGCGAUGCc -3'
miRNA:   3'- uuCGGCGGUGGU--AGgGGUCGCUGCGc -5'
21337 5' -62 NC_004778.3 + 31924 0.7 0.368889
Target:  5'- aAAGUCGUCGCUAUacaaCCCguuggagcuGGCGACGCGc -3'
miRNA:   3'- -UUCGGCGGUGGUAg---GGG---------UCGCUGCGC- -5'
21337 5' -62 NC_004778.3 + 120971 0.69 0.384965
Target:  5'- cGGGCCGCgC-CCGcugCCCCGGCGcCGCc -3'
miRNA:   3'- -UUCGGCG-GuGGUa--GGGGUCGCuGCGc -5'
21337 5' -62 NC_004778.3 + 116158 0.69 0.409932
Target:  5'- --aCCGCCGCa--CCCCGccaacGCGACGCGa -3'
miRNA:   3'- uucGGCGGUGguaGGGGU-----CGCUGCGC- -5'
21337 5' -62 NC_004778.3 + 33455 0.69 0.409932
Target:  5'- aAAG-CGCgGCCGUCCgCaCGGCGGCGUGc -3'
miRNA:   3'- -UUCgGCGgUGGUAGG-G-GUCGCUGCGC- -5'
21337 5' -62 NC_004778.3 + 85385 0.69 0.427126
Target:  5'- -cGCCGCCGCaaacgCCCgCgugGGCGACGCc -3'
miRNA:   3'- uuCGGCGGUGgua--GGG-G---UCGCUGCGc -5'
21337 5' -62 NC_004778.3 + 124513 0.69 0.427126
Target:  5'- cAGCCGCCGCCGg-UCCGGUcuuCGCGg -3'
miRNA:   3'- uUCGGCGGUGGUagGGGUCGcu-GCGC- -5'
21337 5' -62 NC_004778.3 + 116751 0.68 0.435883
Target:  5'- aAAGCuCGCCGCCGgucggCUgaCUGGCGACGUGu -3'
miRNA:   3'- -UUCG-GCGGUGGUa----GG--GGUCGCUGCGC- -5'
21337 5' -62 NC_004778.3 + 82239 0.68 0.435883
Target:  5'- -cGCCGCgcucUACCAacaacUCCuCCAGCGugGUGc -3'
miRNA:   3'- uuCGGCG----GUGGU-----AGG-GGUCGCugCGC- -5'
21337 5' -62 NC_004778.3 + 97384 0.68 0.435883
Target:  5'- -uGCUGaCCGCCAUCgUgUGGCGGCGCGc -3'
miRNA:   3'- uuCGGC-GGUGGUAG-GgGUCGCUGCGC- -5'
21337 5' -62 NC_004778.3 + 28955 0.68 0.481146
Target:  5'- cGGCCGCgGCguUUCCUuGCGAUGCu -3'
miRNA:   3'- uUCGGCGgUGguAGGGGuCGCUGCGc -5'
21337 5' -62 NC_004778.3 + 12917 0.67 0.489537
Target:  5'- aAGGCCG-CAUCGUCCCCAagcucgcccgacaGCGgaaucgGCGCGg -3'
miRNA:   3'- -UUCGGCgGUGGUAGGGGU-------------CGC------UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.