miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21338 3' -53.8 NC_004778.3 + 39674 0.66 0.922218
Target:  5'- -cAUGACCGCCGaagacCCGUacauUCCGCAc- -3'
miRNA:   3'- uuUACUGGUGGCa----GGCAc---AGGCGUug -5'
21338 3' -53.8 NC_004778.3 + 47656 0.66 0.922218
Target:  5'- ---cGGCUAgCGUuuGUGUC-GCAGCa -3'
miRNA:   3'- uuuaCUGGUgGCAggCACAGgCGUUG- -5'
21338 3' -53.8 NC_004778.3 + 11980 0.67 0.916378
Target:  5'- ---cGACCAUCGUCaaCGUGgcaggCCGCuGCc -3'
miRNA:   3'- uuuaCUGGUGGCAG--GCACa----GGCGuUG- -5'
21338 3' -53.8 NC_004778.3 + 63176 0.67 0.897342
Target:  5'- cGGUGugCACCGUuuGaaacGUgCGCGGCu -3'
miRNA:   3'- uUUACugGUGGCAggCa---CAgGCGUUG- -5'
21338 3' -53.8 NC_004778.3 + 98717 0.67 0.8905
Target:  5'- cGAUGGCaGCCGgCCGcGgCCGCAGCg -3'
miRNA:   3'- uUUACUGgUGGCaGGCaCaGGCGUUG- -5'
21338 3' -53.8 NC_004778.3 + 14551 0.68 0.876091
Target:  5'- ---cGACCGCgCGUCCaUGUgCGcCAGCa -3'
miRNA:   3'- uuuaCUGGUG-GCAGGcACAgGC-GUUG- -5'
21338 3' -53.8 NC_004778.3 + 83422 0.68 0.859962
Target:  5'- ----aGCCGCCGcgCCGUuccgcgcGUCUGCAACa -3'
miRNA:   3'- uuuacUGGUGGCa-GGCA-------CAGGCGUUG- -5'
21338 3' -53.8 NC_004778.3 + 129034 0.69 0.827488
Target:  5'- ---cGGCUACCGgggCgGUGUCUGCGGg -3'
miRNA:   3'- uuuaCUGGUGGCa--GgCACAGGCGUUg -5'
21338 3' -53.8 NC_004778.3 + 121316 0.7 0.781714
Target:  5'- cAGAUGGCUugcaGCUGcgCCGUGUCgGCGAUa -3'
miRNA:   3'- -UUUACUGG----UGGCa-GGCACAGgCGUUG- -5'
21338 3' -53.8 NC_004778.3 + 66094 0.7 0.752454
Target:  5'- ---aGGCUGCCGaUCCGUGUuuGaCGGCg -3'
miRNA:   3'- uuuaCUGGUGGC-AGGCACAggC-GUUG- -5'
21338 3' -53.8 NC_004778.3 + 107654 0.71 0.691153
Target:  5'- aAAGUGAUCGuuCCGacgcCCGUGUCgCGCGACg -3'
miRNA:   3'- -UUUACUGGU--GGCa---GGCACAG-GCGUUG- -5'
21338 3' -53.8 NC_004778.3 + 58181 0.72 0.670191
Target:  5'- ----cGCCGCCG-CCGUGUCCGaauGCa -3'
miRNA:   3'- uuuacUGGUGGCaGGCACAGGCgu-UG- -5'
21338 3' -53.8 NC_004778.3 + 38116 0.72 0.649098
Target:  5'- ----cGCaCGCCGUCCGcGUCCGCAGu -3'
miRNA:   3'- uuuacUG-GUGGCAGGCaCAGGCGUUg -5'
21338 3' -53.8 NC_004778.3 + 101249 1.07 0.00469
Target:  5'- cAAAUGACCACCGUCCGUGUCCGCAACu -3'
miRNA:   3'- -UUUACUGGUGGCAGGCACAGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.