miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21339 3' -51 NC_004778.3 + 35662 0.66 0.986078
Target:  5'- gAGcCCAUGgacgucggcCACCGAUUUuggCACCGUgugCCa -3'
miRNA:   3'- -UC-GGUACa--------GUGGCUAAG---GUGGUAa--GG- -5'
21339 3' -51 NC_004778.3 + 76797 0.67 0.972418
Target:  5'- cGCCAa-UUACCGAg-CgGCCGUUCCg -3'
miRNA:   3'- uCGGUacAGUGGCUaaGgUGGUAAGG- -5'
21339 3' -51 NC_004778.3 + 73723 0.68 0.969121
Target:  5'- aGGCCGUGUguUCGGcgUCACCAcgguguagccggaUUCCa -3'
miRNA:   3'- -UCGGUACAguGGCUaaGGUGGU-------------AAGG- -5'
21339 3' -51 NC_004778.3 + 92273 0.68 0.96278
Target:  5'- cGUCGUGcCACCGGUUucacaaauuaccCCACCAUacgugCCc -3'
miRNA:   3'- uCGGUACaGUGGCUAA------------GGUGGUAa----GG- -5'
21339 3' -51 NC_004778.3 + 55969 0.68 0.96278
Target:  5'- cGCaCAUGUCGCCGcccacgUCCugCAUg-- -3'
miRNA:   3'- uCG-GUACAGUGGCua----AGGugGUAagg -5'
21339 3' -51 NC_004778.3 + 25341 0.69 0.941923
Target:  5'- cGGCCAuuUGUCGCgGcgacauaaAUUCUACCG-UCCa -3'
miRNA:   3'- -UCGGU--ACAGUGgC--------UAAGGUGGUaAGG- -5'
21339 3' -51 NC_004778.3 + 35139 0.69 0.931802
Target:  5'- cGGCCA--UCGCCGAcuaggguggCCGCCAUcgaaaUCCg -3'
miRNA:   3'- -UCGGUacAGUGGCUaa-------GGUGGUA-----AGG- -5'
21339 3' -51 NC_004778.3 + 77620 0.7 0.926351
Target:  5'- uGGCguUGUCACUGcgaaaCCACCAU-CCa -3'
miRNA:   3'- -UCGguACAGUGGCuaa--GGUGGUAaGG- -5'
21339 3' -51 NC_004778.3 + 58162 0.7 0.926351
Target:  5'- cGCCAcccgacGUCGCCGccgccgCCGCCGUgUCCg -3'
miRNA:   3'- uCGGUa-----CAGUGGCuaa---GGUGGUA-AGG- -5'
21339 3' -51 NC_004778.3 + 121434 0.7 0.92064
Target:  5'- cGGCCGUGUCGCCGccgUCgGCg---CCg -3'
miRNA:   3'- -UCGGUACAGUGGCua-AGgUGguaaGG- -5'
21339 3' -51 NC_004778.3 + 75928 0.71 0.864216
Target:  5'- aGGCCGUGUUugCGcacaugcuugCCGCCAgcgCCg -3'
miRNA:   3'- -UCGGUACAGugGCuaa-------GGUGGUaa-GG- -5'
21339 3' -51 NC_004778.3 + 24784 0.78 0.506249
Target:  5'- uGCCGUGUCACCGuggaaaCUGCCGUUCg -3'
miRNA:   3'- uCGGUACAGUGGCuaa---GGUGGUAAGg -5'
21339 3' -51 NC_004778.3 + 101425 1.14 0.003774
Target:  5'- aAGCCAUGUCACCGAUUCCACCAUUCCa -3'
miRNA:   3'- -UCGGUACAGUGGCUAAGGUGGUAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.