Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21339 | 3' | -51 | NC_004778.3 | + | 24784 | 0.78 | 0.506249 |
Target: 5'- uGCCGUGUCACCGuggaaaCUGCCGUUCg -3' miRNA: 3'- uCGGUACAGUGGCuaa---GGUGGUAAGg -5' |
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21339 | 3' | -51 | NC_004778.3 | + | 75928 | 0.71 | 0.864216 |
Target: 5'- aGGCCGUGUUugCGcacaugcuugCCGCCAgcgCCg -3' miRNA: 3'- -UCGGUACAGugGCuaa-------GGUGGUaa-GG- -5' |
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21339 | 3' | -51 | NC_004778.3 | + | 35139 | 0.69 | 0.931802 |
Target: 5'- cGGCCA--UCGCCGAcuaggguggCCGCCAUcgaaaUCCg -3' miRNA: 3'- -UCGGUacAGUGGCUaa-------GGUGGUA-----AGG- -5' |
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21339 | 3' | -51 | NC_004778.3 | + | 92273 | 0.68 | 0.96278 |
Target: 5'- cGUCGUGcCACCGGUUucacaaauuaccCCACCAUacgugCCc -3' miRNA: 3'- uCGGUACaGUGGCUAA------------GGUGGUAa----GG- -5' |
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21339 | 3' | -51 | NC_004778.3 | + | 73723 | 0.68 | 0.969121 |
Target: 5'- aGGCCGUGUguUCGGcgUCACCAcgguguagccggaUUCCa -3' miRNA: 3'- -UCGGUACAguGGCUaaGGUGGU-------------AAGG- -5' |
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21339 | 3' | -51 | NC_004778.3 | + | 76797 | 0.67 | 0.972418 |
Target: 5'- cGCCAa-UUACCGAg-CgGCCGUUCCg -3' miRNA: 3'- uCGGUacAGUGGCUaaGgUGGUAAGG- -5' |
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21339 | 3' | -51 | NC_004778.3 | + | 35662 | 0.66 | 0.986078 |
Target: 5'- gAGcCCAUGgacgucggcCACCGAUUUuggCACCGUgugCCa -3' miRNA: 3'- -UC-GGUACa--------GUGGCUAAG---GUGGUAa--GG- -5' |
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21339 | 3' | -51 | NC_004778.3 | + | 55969 | 0.68 | 0.96278 |
Target: 5'- cGCaCAUGUCGCCGcccacgUCCugCAUg-- -3' miRNA: 3'- uCG-GUACAGUGGCua----AGGugGUAagg -5' |
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21339 | 3' | -51 | NC_004778.3 | + | 25341 | 0.69 | 0.941923 |
Target: 5'- cGGCCAuuUGUCGCgGcgacauaaAUUCUACCG-UCCa -3' miRNA: 3'- -UCGGU--ACAGUGgC--------UAAGGUGGUaAGG- -5' |
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21339 | 3' | -51 | NC_004778.3 | + | 77620 | 0.7 | 0.926351 |
Target: 5'- uGGCguUGUCACUGcgaaaCCACCAU-CCa -3' miRNA: 3'- -UCGguACAGUGGCuaa--GGUGGUAaGG- -5' |
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21339 | 3' | -51 | NC_004778.3 | + | 58162 | 0.7 | 0.926351 |
Target: 5'- cGCCAcccgacGUCGCCGccgccgCCGCCGUgUCCg -3' miRNA: 3'- uCGGUa-----CAGUGGCuaa---GGUGGUA-AGG- -5' |
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21339 | 3' | -51 | NC_004778.3 | + | 121434 | 0.7 | 0.92064 |
Target: 5'- cGGCCGUGUCGCCGccgUCgGCg---CCg -3' miRNA: 3'- -UCGGUACAGUGGCua-AGgUGguaaGG- -5' |
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21339 | 3' | -51 | NC_004778.3 | + | 101425 | 1.14 | 0.003774 |
Target: 5'- aAGCCAUGUCACCGAUUCCACCAUUCCa -3' miRNA: 3'- -UCGGUACAGUGGCUAAGGUGGUAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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