miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21339 5' -50.7 NC_004778.3 + 14615 0.66 0.987293
Target:  5'- aCAGGGGAC--GCACGCUGGaAUGGa- -3'
miRNA:   3'- -GUUCUUUGgaCGUGCGACUgUACCag -5'
21339 5' -50.7 NC_004778.3 + 15623 0.66 0.981603
Target:  5'- gGAGAuGCgCggcaGCACuuUGGCGUGGUCg -3'
miRNA:   3'- gUUCUuUG-Ga---CGUGcgACUGUACCAG- -5'
21339 5' -50.7 NC_004778.3 + 124292 0.67 0.976865
Target:  5'- uCAAGAAugCUGaagcgcgGCGCcGGCGUGGg- -3'
miRNA:   3'- -GUUCUUugGACg------UGCGaCUGUACCag -5'
21339 5' -50.7 NC_004778.3 + 22290 0.67 0.971288
Target:  5'- uGGGcAAUUUGCGCGCccgccaccaacGACAUGGUCu -3'
miRNA:   3'- gUUCuUUGGACGUGCGa----------CUGUACCAG- -5'
21339 5' -50.7 NC_004778.3 + 61975 0.68 0.957358
Target:  5'- uCGGGgcGCUUGC-CGCUGcGCGUGGcCa -3'
miRNA:   3'- -GUUCuuUGGACGuGCGAC-UGUACCaG- -5'
21339 5' -50.7 NC_004778.3 + 58171 0.69 0.939401
Target:  5'- --cGAAACgUGCACGCagUGGCAUGcGcUCg -3'
miRNA:   3'- guuCUUUGgACGUGCG--ACUGUAC-C-AG- -5'
21339 5' -50.7 NC_004778.3 + 45227 0.7 0.910961
Target:  5'- cCAGGAcGCCgcucGCGCGCUGA--UGGUa -3'
miRNA:   3'- -GUUCUuUGGa---CGUGCGACUguACCAg -5'
21339 5' -50.7 NC_004778.3 + 33168 0.72 0.825865
Target:  5'- -cGGcAACUUGCACGCUGACG-GGcCg -3'
miRNA:   3'- guUCuUUGGACGUGCGACUGUaCCaG- -5'
21339 5' -50.7 NC_004778.3 + 38926 0.72 0.81678
Target:  5'- uGGGAuAGCgCUGCGCGUgcggaucGGCGUGGUCg -3'
miRNA:   3'- gUUCU-UUG-GACGUGCGa------CUGUACCAG- -5'
21339 5' -50.7 NC_004778.3 + 12136 0.77 0.566337
Target:  5'- -cAGcgGCCUGcCACGUUGACgAUGGUCg -3'
miRNA:   3'- guUCuuUGGAC-GUGCGACUG-UACCAG- -5'
21339 5' -50.7 NC_004778.3 + 101459 1.11 0.00504
Target:  5'- cCAAGAAACCUGCACGCUGACAUGGUCg -3'
miRNA:   3'- -GUUCUUUGGACGUGCGACUGUACCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.