miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21340 3' -44.7 NC_004778.3 + 106251 1.13 0.017323
Target:  5'- cUCACAACCUUUAUCGCCAACAACUACa -3'
miRNA:   3'- -AGUGUUGGAAAUAGCGGUUGUUGAUG- -5'
21340 3' -44.7 NC_004778.3 + 7033 0.81 0.745852
Target:  5'- gUCAUAGCCUUUGUCuguuuugauaGCCAGCAAC-ACg -3'
miRNA:   3'- -AGUGUUGGAAAUAG----------CGGUUGUUGaUG- -5'
21340 3' -44.7 NC_004778.3 + 121489 0.79 0.861142
Target:  5'- cCAUGACCcgcUUAUCGCCGACAcggcgcaGCUGCa -3'
miRNA:   3'- aGUGUUGGa--AAUAGCGGUUGU-------UGAUG- -5'
21340 3' -44.7 NC_004778.3 + 108162 0.77 0.920502
Target:  5'- gCACGAUCaUUAUCGCCAgauGCAGCgGCa -3'
miRNA:   3'- aGUGUUGGaAAUAGCGGU---UGUUGaUG- -5'
21340 3' -44.7 NC_004778.3 + 4806 0.74 0.979605
Target:  5'- uUCGCAACCUUU-UCGaCAGCAACa-- -3'
miRNA:   3'- -AGUGUUGGAAAuAGCgGUUGUUGaug -5'
21340 3' -44.7 NC_004778.3 + 83391 0.74 0.981937
Target:  5'- aCGCAGCCa--AUCGCCcguGCAGCUGg -3'
miRNA:   3'- aGUGUUGGaaaUAGCGGu--UGUUGAUg -5'
21340 3' -44.7 NC_004778.3 + 3059 0.73 0.989312
Target:  5'- gCAUAAUCUUUuagCGCCuuguacGGCAACUGCa -3'
miRNA:   3'- aGUGUUGGAAAua-GCGG------UUGUUGAUG- -5'
21340 3' -44.7 NC_004778.3 + 110319 0.72 0.991983
Target:  5'- gCGCGugcGCCUuuaguUUGUCGUaCGGCAGCUGCa -3'
miRNA:   3'- aGUGU---UGGA-----AAUAGCG-GUUGUUGAUG- -5'
21340 3' -44.7 NC_004778.3 + 52323 0.72 0.993103
Target:  5'- cCGCuGCCUUU-UCGCCAAacgAGCUGCc -3'
miRNA:   3'- aGUGuUGGAAAuAGCGGUUg--UUGAUG- -5'
21340 3' -44.7 NC_004778.3 + 34312 0.72 0.994095
Target:  5'- gCGCAGCU--UGUCGCCGccgGCGACcGCg -3'
miRNA:   3'- aGUGUUGGaaAUAGCGGU---UGUUGaUG- -5'
21340 3' -44.7 NC_004778.3 + 75402 0.72 0.994969
Target:  5'- --uCAGCuCUUUGUCGCCGACAA--ACa -3'
miRNA:   3'- aguGUUG-GAAAUAGCGGUUGUUgaUG- -5'
21340 3' -44.7 NC_004778.3 + 32026 0.72 0.994969
Target:  5'- aUAC-GCCUUUGaaagCGCCGACAagACUACc -3'
miRNA:   3'- aGUGuUGGAAAUa---GCGGUUGU--UGAUG- -5'
21340 3' -44.7 NC_004778.3 + 87107 0.71 0.995734
Target:  5'- -gGCAGCCg----CGCCAAgGGCUAUg -3'
miRNA:   3'- agUGUUGGaaauaGCGGUUgUUGAUG- -5'
21340 3' -44.7 NC_004778.3 + 62276 0.71 0.995734
Target:  5'- -gAgGACCUgu-UCGCCGGCGGCgGCa -3'
miRNA:   3'- agUgUUGGAaauAGCGGUUGUUGaUG- -5'
21340 3' -44.7 NC_004778.3 + 52368 0.71 0.995734
Target:  5'- gCGCAGCga-UGUCG-CAACAACUGCg -3'
miRNA:   3'- aGUGUUGgaaAUAGCgGUUGUUGAUG- -5'
21340 3' -44.7 NC_004778.3 + 72201 0.71 0.995734
Target:  5'- -aGCAGCCUggaccUUGUgGcCCAACAGCUAa -3'
miRNA:   3'- agUGUUGGA-----AAUAgC-GGUUGUUGAUg -5'
21340 3' -44.7 NC_004778.3 + 28290 0.71 0.996402
Target:  5'- -aGCGACCgcUAUCGC-AGCAGCUGg -3'
miRNA:   3'- agUGUUGGaaAUAGCGgUUGUUGAUg -5'
21340 3' -44.7 NC_004778.3 + 26011 0.7 0.99791
Target:  5'- aCACAcCCUaaUUAUCGCC-GCAAUUAg -3'
miRNA:   3'- aGUGUuGGA--AAUAGCGGuUGUUGAUg -5'
21340 3' -44.7 NC_004778.3 + 68093 0.7 0.998276
Target:  5'- -aACAGCCcgag-CGCCAGCGACgcaGCa -3'
miRNA:   3'- agUGUUGGaaauaGCGGUUGUUGa--UG- -5'
21340 3' -44.7 NC_004778.3 + 62410 0.7 0.998276
Target:  5'- aUCaACAGCUg-----GCCAACAACUACg -3'
miRNA:   3'- -AG-UGUUGGaaauagCGGUUGUUGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.