miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21340 5' -58.4 NC_004778.3 + 120134 0.72 0.453955
Target:  5'- -aGCAAUCGUagggguuGCGCUC-UGCCUGCg -3'
miRNA:   3'- gaCGUUAGCAgu-----CGCGGGcACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 64592 0.67 0.721013
Target:  5'- gUGUAGUUGUCGGgGCauuCGcGCaCCGCg -3'
miRNA:   3'- gACGUUAGCAGUCgCGg--GCaCG-GGCG- -5'
21340 5' -58.4 NC_004778.3 + 108613 0.67 0.730823
Target:  5'- -cGCAG-CG-CAGCuGUCCGUacaacaaauacaGCCCGCg -3'
miRNA:   3'- gaCGUUaGCaGUCG-CGGGCA------------CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 106054 0.66 0.778423
Target:  5'- -aGaCAAgUGUCGGCGCCgCGUguuuuaauaacaGCCCGUc -3'
miRNA:   3'- gaC-GUUaGCAGUCGCGG-GCA------------CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 47674 0.66 0.769126
Target:  5'- -cGCAGUCGgugUUGGCGCCgGgaaaaaUGCCCaGCc -3'
miRNA:   3'- gaCGUUAGC---AGUCGCGGgC------ACGGG-CG- -5'
21340 5' -58.4 NC_004778.3 + 25753 0.66 0.769126
Target:  5'- -aGCAG-CGUCAGUGUCgGcagGCCgGCc -3'
miRNA:   3'- gaCGUUaGCAGUCGCGGgCa--CGGgCG- -5'
21340 5' -58.4 NC_004778.3 + 83400 0.66 0.769126
Target:  5'- uCUGCAAcaaCG-CAGCcaaucGCCCGUGCagcuggccgCCGCu -3'
miRNA:   3'- -GACGUUa--GCaGUCG-----CGGGCACG---------GGCG- -5'
21340 5' -58.4 NC_004778.3 + 112225 0.66 0.759708
Target:  5'- -aGCAcaccAUCaUgGGCGUagacgaCGUGCCCGCg -3'
miRNA:   3'- gaCGU----UAGcAgUCGCGg-----GCACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 66737 0.66 0.750179
Target:  5'- -aGCAcUCGcuuuUCgAGaCGCUCGUGCCCGa -3'
miRNA:   3'- gaCGUuAGC----AG-UC-GCGGGCACGGGCg -5'
21340 5' -58.4 NC_004778.3 + 95160 0.66 0.750179
Target:  5'- cCUGCc--CGUCGGCGCaCG-GCgCGCg -3'
miRNA:   3'- -GACGuuaGCAGUCGCGgGCaCGgGCG- -5'
21340 5' -58.4 NC_004778.3 + 34608 0.67 0.740548
Target:  5'- gUGCGcUCcUCGacGCGCagCGUGCCCGUg -3'
miRNA:   3'- gACGUuAGcAGU--CGCGg-GCACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 43570 0.67 0.740548
Target:  5'- -cGCuGUCGUCGcUGUCCGccgGCUCGCa -3'
miRNA:   3'- gaCGuUAGCAGUcGCGGGCa--CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 33517 0.67 0.730823
Target:  5'- -gGCGcGUCGUCcGCGa-CGUcGCCCGCg -3'
miRNA:   3'- gaCGU-UAGCAGuCGCggGCA-CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 95407 0.74 0.329428
Target:  5'- gUGCGGUCGccgCGGCGCaCCaUGCCCGa -3'
miRNA:   3'- gACGUUAGCa--GUCGCG-GGcACGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.