Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 110003 | 0.67 | 0.711128 |
Target: 5'- -aGUggUgGUCAGCGucCCCGaauaUGCgCCGCu -3' miRNA: 3'- gaCGuuAgCAGUCGC--GGGC----ACG-GGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 124230 | 0.7 | 0.549678 |
Target: 5'- -cGCGcgCaUCAGCGCgCCGUGCauCUGCa -3' miRNA: 3'- gaCGUuaGcAGUCGCG-GGCACG--GGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 112225 | 0.66 | 0.759708 |
Target: 5'- -aGCAcaccAUCaUgGGCGUagacgaCGUGCCCGCg -3' miRNA: 3'- gaCGU----UAGcAgUCGCGg-----GCACGGGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 35193 | 0.67 | 0.711128 |
Target: 5'- aCUGCAAaCGcagcuugacuUUGGCGCCCGccgugucguaccUGCCCuGCg -3' miRNA: 3'- -GACGUUaGC----------AGUCGCGGGC------------ACGGG-CG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 48671 | 0.69 | 0.589797 |
Target: 5'- uUGUggUCG-CGGUGCUgcugGUGCCUGCg -3' miRNA: 3'- gACGuuAGCaGUCGCGGg---CACGGGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 33077 | 0.7 | 0.520148 |
Target: 5'- -cGCAA-CGgugCAGCgGCCCGcUGCCgCGCu -3' miRNA: 3'- gaCGUUaGCa--GUCG-CGGGC-ACGG-GCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 34414 | 0.71 | 0.472423 |
Target: 5'- gCUGCuc-CGgCAGCGCggCGUGCCCGUa -3' miRNA: 3'- -GACGuuaGCaGUCGCGg-GCACGGGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 21083 | 0.66 | 0.79662 |
Target: 5'- -cGaCAggCGUCAGCGCggugcaGCCCGCg -3' miRNA: 3'- gaC-GUuaGCAGUCGCGggca--CGGGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 14718 | 0.66 | 0.78759 |
Target: 5'- uUGCAuUCGa-GGUGCCCGguucguaCCCGCu -3' miRNA: 3'- gACGUuAGCagUCGCGGGCac-----GGGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 124040 | 0.66 | 0.78759 |
Target: 5'- gCUGCAGuuucuuguacuUCGUgcaAGUGCUCGUGCagaUGCa -3' miRNA: 3'- -GACGUU-----------AGCAg--UCGCGGGCACGg--GCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 91773 | 0.67 | 0.701177 |
Target: 5'- -gGCGAuuaUCGcuucuUUAGCGCCCGUGCgcaUCGUg -3' miRNA: 3'- gaCGUU---AGC-----AGUCGCGGGCACG---GGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 90543 | 0.67 | 0.691169 |
Target: 5'- gCUGCAgcGUCGgauaguggCAGCGCUCGccGCCgaGCg -3' miRNA: 3'- -GACGU--UAGCa-------GUCGCGGGCa-CGGg-CG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 69780 | 0.68 | 0.681112 |
Target: 5'- -cGCGAgaacCGagaGGCGgCCGUGCCuCGCg -3' miRNA: 3'- gaCGUUa---GCag-UCGCgGGCACGG-GCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 60496 | 0.68 | 0.681112 |
Target: 5'- gCUGCcgcgccUCGUUgauGCgcauGCCCGUGCCCaGCa -3' miRNA: 3'- -GACGuu----AGCAGu--CG----CGGGCACGGG-CG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 38116 | 0.66 | 0.765373 |
Target: 5'- -cGCAcgcCGUCcGCGUCCGcagugaagcgcagGCCCGCu -3' miRNA: 3'- gaCGUua-GCAGuCGCGGGCa------------CGGGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 14500 | 0.66 | 0.769126 |
Target: 5'- gUGCGAUUG-CGGCGacgagaCCGUGaCgCGCg -3' miRNA: 3'- gACGUUAGCaGUCGCg-----GGCAC-GgGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 39394 | 0.66 | 0.769126 |
Target: 5'- -cGUAGUUGUgGG-GCCCGgUGCUgGCg -3' miRNA: 3'- gaCGUUAGCAgUCgCGGGC-ACGGgCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 94785 | 0.66 | 0.769126 |
Target: 5'- gUGCAGUUGcCuGCgGCCCGgGCUCGg -3' miRNA: 3'- gACGUUAGCaGuCG-CGGGCaCGGGCg -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 93890 | 0.66 | 0.77286 |
Target: 5'- -aGCAAaacgUGuuUCGGCGCUCGUauauaacgcacauccGCCCGCu -3' miRNA: 3'- gaCGUUa---GC--AGUCGCGGGCA---------------CGGGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 43123 | 0.66 | 0.778423 |
Target: 5'- -cGCAAgcgcuUCGaCGGCGCCgCGgcGCgCCGCa -3' miRNA: 3'- gaCGUU-----AGCaGUCGCGG-GCa-CG-GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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