miRNA display CGI


Results 41 - 54 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21340 5' -58.4 NC_004778.3 + 91773 0.67 0.701177
Target:  5'- -gGCGAuuaUCGcuucuUUAGCGCCCGUGCgcaUCGUg -3'
miRNA:   3'- gaCGUU---AGC-----AGUCGCGGGCACG---GGCG- -5'
21340 5' -58.4 NC_004778.3 + 35193 0.67 0.711128
Target:  5'- aCUGCAAaCGcagcuugacuUUGGCGCCCGccgugucguaccUGCCCuGCg -3'
miRNA:   3'- -GACGUUaGC----------AGUCGCGGGC------------ACGGG-CG- -5'
21340 5' -58.4 NC_004778.3 + 43123 0.66 0.778423
Target:  5'- -cGCAAgcgcuUCGaCGGCGCCgCGgcGCgCCGCa -3'
miRNA:   3'- gaCGUU-----AGCaGUCGCGG-GCa-CG-GGCG- -5'
21340 5' -58.4 NC_004778.3 + 93890 0.66 0.77286
Target:  5'- -aGCAAaacgUGuuUCGGCGCUCGUauauaacgcacauccGCCCGCu -3'
miRNA:   3'- gaCGUUa---GC--AGUCGCGGGCA---------------CGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 94785 0.66 0.769126
Target:  5'- gUGCAGUUGcCuGCgGCCCGgGCUCGg -3'
miRNA:   3'- gACGUUAGCaGuCG-CGGGCaCGGGCg -5'
21340 5' -58.4 NC_004778.3 + 39394 0.66 0.769126
Target:  5'- -cGUAGUUGUgGG-GCCCGgUGCUgGCg -3'
miRNA:   3'- gaCGUUAGCAgUCgCGGGC-ACGGgCG- -5'
21340 5' -58.4 NC_004778.3 + 14500 0.66 0.769126
Target:  5'- gUGCGAUUG-CGGCGacgagaCCGUGaCgCGCg -3'
miRNA:   3'- gACGUUAGCaGUCGCg-----GGCAC-GgGCG- -5'
21340 5' -58.4 NC_004778.3 + 38505 0.66 0.759708
Target:  5'- -cGCGAcgCGuUCGGCGUCCaUGCCUuGCa -3'
miRNA:   3'- gaCGUUa-GC-AGUCGCGGGcACGGG-CG- -5'
21340 5' -58.4 NC_004778.3 + 98743 0.66 0.750179
Target:  5'- gUGCuucguGUUGUagCAGCGCgCGUGCaagCCGCc -3'
miRNA:   3'- gACGu----UAGCA--GUCGCGgGCACG---GGCG- -5'
21340 5' -58.4 NC_004778.3 + 20937 0.66 0.750179
Target:  5'- -cGCAGcccaGcCGGcCGCCCGauUGCCCGUa -3'
miRNA:   3'- gaCGUUag--CaGUC-GCGGGC--ACGGGCG- -5'
21340 5' -58.4 NC_004778.3 + 121312 0.66 0.750179
Target:  5'- gCUGCAGaUGgcuugCAGCuGCgCCGUGUCgGCg -3'
miRNA:   3'- -GACGUUaGCa----GUCG-CG-GGCACGGgCG- -5'
21340 5' -58.4 NC_004778.3 + 111709 0.67 0.740548
Target:  5'- uUGCAG-CGUCGGCGCCUccGaaaaCUGCu -3'
miRNA:   3'- gACGUUaGCAGUCGCGGGcaCg---GGCG- -5'
21340 5' -58.4 NC_004778.3 + 112190 0.67 0.736668
Target:  5'- aCUGCAcuUCGuucUCGGCGCCCucgcgcauagcgGCCgCGCg -3'
miRNA:   3'- -GACGUu-AGC---AGUCGCGGGca----------CGG-GCG- -5'
21340 5' -58.4 NC_004778.3 + 106285 1.11 0.001105
Target:  5'- aCUGCAAUCGUCAGCGCCCGUGCCCGCc -3'
miRNA:   3'- -GACGUUAGCAGUCGCGGGCACGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.