Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21340 | 5' | -58.4 | NC_004778.3 | + | 121312 | 0.66 | 0.750179 |
Target: 5'- gCUGCAGaUGgcuugCAGCuGCgCCGUGUCgGCg -3' miRNA: 3'- -GACGUUaGCa----GUCG-CG-GGCACGGgCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 43570 | 0.67 | 0.740548 |
Target: 5'- -cGCuGUCGUCGcUGUCCGccgGCUCGCa -3' miRNA: 3'- gaCGuUAGCAGUcGCGGGCa--CGGGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 34608 | 0.67 | 0.740548 |
Target: 5'- gUGCGcUCcUCGacGCGCagCGUGCCCGUg -3' miRNA: 3'- gACGUuAGcAGU--CGCGg-GCACGGGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 111709 | 0.67 | 0.740548 |
Target: 5'- uUGCAG-CGUCGGCGCCUccGaaaaCUGCu -3' miRNA: 3'- gACGUUaGCAGUCGCGGGcaCg---GGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 112190 | 0.67 | 0.736668 |
Target: 5'- aCUGCAcuUCGuucUCGGCGCCCucgcgcauagcgGCCgCGCg -3' miRNA: 3'- -GACGUu-AGC---AGUCGCGGGca----------CGG-GCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 108613 | 0.67 | 0.730823 |
Target: 5'- -cGCAG-CG-CAGCuGUCCGUacaacaaauacaGCCCGCg -3' miRNA: 3'- gaCGUUaGCaGUCG-CGGGCA------------CGGGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 33517 | 0.67 | 0.730823 |
Target: 5'- -gGCGcGUCGUCcGCGa-CGUcGCCCGCg -3' miRNA: 3'- gaCGU-UAGCAGuCGCggGCA-CGGGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 64592 | 0.67 | 0.721013 |
Target: 5'- gUGUAGUUGUCGGgGCauuCGcGCaCCGCg -3' miRNA: 3'- gACGUUAGCAGUCgCGg--GCaCG-GGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 17326 | 0.67 | 0.711128 |
Target: 5'- gUGCAGUCG-CGGUGCCCGcGCg--- -3' miRNA: 3'- gACGUUAGCaGUCGCGGGCaCGggcg -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 110003 | 0.67 | 0.711128 |
Target: 5'- -aGUggUgGUCAGCGucCCCGaauaUGCgCCGCu -3' miRNA: 3'- gaCGuuAgCAGUCGC--GGGC----ACG-GGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 35193 | 0.67 | 0.711128 |
Target: 5'- aCUGCAAaCGcagcuugacuUUGGCGCCCGccgugucguaccUGCCCuGCg -3' miRNA: 3'- -GACGUUaGC----------AGUCGCGGGC------------ACGGG-CG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 91773 | 0.67 | 0.701177 |
Target: 5'- -gGCGAuuaUCGcuucuUUAGCGCCCGUGCgcaUCGUg -3' miRNA: 3'- gaCGUU---AGC-----AGUCGCGGGCACG---GGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 114751 | 0.67 | 0.691169 |
Target: 5'- aUGCGuacAagGUCGGgGCCCGUgugcaaaacgGCUCGCa -3' miRNA: 3'- gACGU---UagCAGUCgCGGGCA----------CGGGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 90543 | 0.67 | 0.691169 |
Target: 5'- gCUGCAgcGUCGgauaguggCAGCGCUCGccGCCgaGCg -3' miRNA: 3'- -GACGU--UAGCa-------GUCGCGGGCa-CGGg-CG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 69780 | 0.68 | 0.681112 |
Target: 5'- -cGCGAgaacCGagaGGCGgCCGUGCCuCGCg -3' miRNA: 3'- gaCGUUa---GCag-UCGCgGGCACGG-GCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 60496 | 0.68 | 0.681112 |
Target: 5'- gCUGCcgcgccUCGUUgauGCgcauGCCCGUGCCCaGCa -3' miRNA: 3'- -GACGuu----AGCAGu--CG----CGGGCACGGG-CG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 39587 | 0.68 | 0.660886 |
Target: 5'- -cGCAauaGUCGgcaaagCGGCGCCgGUGCUCa- -3' miRNA: 3'- gaCGU---UAGCa-----GUCGCGGgCACGGGcg -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 121718 | 0.68 | 0.64057 |
Target: 5'- -gGCAcGUUGUCGGCGCgCCGUaGCUgGUu -3' miRNA: 3'- gaCGU-UAGCAGUCGCG-GGCA-CGGgCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 127071 | 0.69 | 0.630397 |
Target: 5'- gUGCcGUCGUgCA-CGCCCGgcgagUGCUCGCg -3' miRNA: 3'- gACGuUAGCA-GUcGCGGGC-----ACGGGCG- -5' |
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21340 | 5' | -58.4 | NC_004778.3 | + | 111274 | 0.69 | 0.630397 |
Target: 5'- -aGCAAUgcgCGUUAGCGCCU-UGgCCGCc -3' miRNA: 3'- gaCGUUA---GCAGUCGCGGGcACgGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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