miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 3' -45 NC_004778.3 + 27566 0.68 0.999911
Target:  5'- gCCAAcg--UGGAccGCUG-CCuGCGCGCc -3'
miRNA:   3'- -GGUUaaaaAUCU--CGACaGGuUGCGCG- -5'
21341 3' -45 NC_004778.3 + 125735 0.68 0.999911
Target:  5'- gCCGcgcgUUGGuacGGCUGUCCAuUGUGCc -3'
miRNA:   3'- -GGUuaaaAAUC---UCGACAGGUuGCGCG- -5'
21341 3' -45 NC_004778.3 + 21675 0.68 0.99988
Target:  5'- gCAGUUUUUuauuuuggugagcAGAcGCUGUCUGGCcguauGCGCg -3'
miRNA:   3'- gGUUAAAAA-------------UCU-CGACAGGUUG-----CGCG- -5'
21341 3' -45 NC_004778.3 + 100610 0.68 0.999847
Target:  5'- gCAGUUgu---AGCUgGUCCAgcaucGCGCGCa -3'
miRNA:   3'- gGUUAAaaaucUCGA-CAGGU-----UGCGCG- -5'
21341 3' -45 NC_004778.3 + 67235 0.68 0.999847
Target:  5'- uCCug--UUUGGAGUcGcuccaUCCGAUGCGCg -3'
miRNA:   3'- -GGuuaaAAAUCUCGaC-----AGGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 47571 0.68 0.999801
Target:  5'- gCUGAUg-UUGGGGUggcgcgugGUCCAcGCGCGCg -3'
miRNA:   3'- -GGUUAaaAAUCUCGa-------CAGGU-UGCGCG- -5'
21341 3' -45 NC_004778.3 + 88201 0.68 0.999801
Target:  5'- uUCGAUaa-UGGGGUUG-CCGGCGCGg -3'
miRNA:   3'- -GGUUAaaaAUCUCGACaGGUUGCGCg -5'
21341 3' -45 NC_004778.3 + 43839 0.68 0.999801
Target:  5'- gCUAAUUgcgc-GGCcGUCCGACGCGg -3'
miRNA:   3'- -GGUUAAaaaucUCGaCAGGUUGCGCg -5'
21341 3' -45 NC_004778.3 + 46725 0.68 0.99979
Target:  5'- aCCGGUUgaacgacagcgUGGAGgUGUaCGGCGUGCa -3'
miRNA:   3'- -GGUUAAaa---------AUCUCgACAgGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 68656 0.68 0.999743
Target:  5'- cCCAA-----AGuGCguUCCAACGCGCg -3'
miRNA:   3'- -GGUUaaaaaUCuCGacAGGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 69024 0.69 0.999671
Target:  5'- gCAAUUUaaUUAGAcGCg--CCGugGCGCc -3'
miRNA:   3'- gGUUAAA--AAUCU-CGacaGGUugCGCG- -5'
21341 3' -45 NC_004778.3 + 60517 0.69 0.999671
Target:  5'- aCCAAaccgcUGGAGCUGgcgcgcgaaaUCUAcGCGCGCa -3'
miRNA:   3'- -GGUUaaaa-AUCUCGAC----------AGGU-UGCGCG- -5'
21341 3' -45 NC_004778.3 + 96297 0.69 0.99934
Target:  5'- gCCAAccugaaAGAGCUGcgaCAGCGCGUu -3'
miRNA:   3'- -GGUUaaaaa-UCUCGACag-GUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 38278 0.69 0.99934
Target:  5'- uCCAcgUcg-AG-GCUGaucugcgCCAGCGCGCa -3'
miRNA:   3'- -GGUuaAaaaUCuCGACa------GGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 8035 0.7 0.999179
Target:  5'- --------aGGGGCUG-CUAGCGUGCa -3'
miRNA:   3'- gguuaaaaaUCUCGACaGGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 127375 0.7 0.998754
Target:  5'- gCCAAUauaguacGGcAGCUGUgUGACGCGCu -3'
miRNA:   3'- -GGUUAaaaa---UC-UCGACAgGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 34391 0.7 0.998479
Target:  5'- -gAGUUUUUGcagcucguggccGGGCUGcUCCGGCaGCGCg -3'
miRNA:   3'- ggUUAAAAAU------------CUCGAC-AGGUUG-CGCG- -5'
21341 3' -45 NC_004778.3 + 28990 0.7 0.998155
Target:  5'- gCGGUUUUcgcgAGAGCUGauugcgCUAAUGUGCg -3'
miRNA:   3'- gGUUAAAAa---UCUCGACa-----GGUUGCGCG- -5'
21341 3' -45 NC_004778.3 + 70388 0.71 0.997329
Target:  5'- cCCAcUUUUUGacgcccGuGCUGUCCGGCGCu- -3'
miRNA:   3'- -GGUuAAAAAU------CuCGACAGGUUGCGcg -5'
21341 3' -45 NC_004778.3 + 9595 0.71 0.997232
Target:  5'- gCCGAgacgac-GGCcgUGUCCAACGUGCg -3'
miRNA:   3'- -GGUUaaaaaucUCG--ACAGGUUGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.