miRNA display CGI


Results 21 - 40 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 8488 0.66 0.996209
Target:  5'- gGCGCGUuccGCAa---GCGCGGCg--UGGu -3'
miRNA:   3'- -CGCGCG---CGUuuugCGCGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 114803 0.66 0.996789
Target:  5'- cCGUGCGCAAA-CGCuucGCGGCUGc--- -3'
miRNA:   3'- cGCGCGCGUUUuGCG---CGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 101464 0.66 0.996209
Target:  5'- aUGCGCGuCAAggUGUGCGAUga--GGa -3'
miRNA:   3'- cGCGCGC-GUUuuGCGCGUUGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 90785 0.66 0.996209
Target:  5'- gGCGUGCGC-AAACGUGUuuAC-GUUGa -3'
miRNA:   3'- -CGCGCGCGuUUUGCGCGu-UGaUAACc -5'
21341 5' -49.2 NC_004778.3 + 118934 0.66 0.997648
Target:  5'- uGUGCGCGCcGGcCGCGCcGCgcccgaagcgUGGc -3'
miRNA:   3'- -CGCGCGCGuUUuGCGCGuUGaua-------ACC- -5'
21341 5' -49.2 NC_004778.3 + 16170 0.66 0.997293
Target:  5'- uGCGCGuCGCGGAuaacaACGCcaaGCAAgUucuuUUGGg -3'
miRNA:   3'- -CGCGC-GCGUUU-----UGCG---CGUUgAu---AACC- -5'
21341 5' -49.2 NC_004778.3 + 38137 0.66 0.996789
Target:  5'- aCGUGUGCAugacugcuGACGCGCcGCUAc--- -3'
miRNA:   3'- cGCGCGCGUu-------UUGCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 16951 0.66 0.997293
Target:  5'- cGCGCGCGCuguuCGauaugGCGACca-UGGg -3'
miRNA:   3'- -CGCGCGCGuuuuGCg----CGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 17345 0.66 0.99773
Target:  5'- -gGUGCGCGGGGCGC-UAGCUGa--- -3'
miRNA:   3'- cgCGCGCGUUUUGCGcGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 93008 0.66 0.99773
Target:  5'- gGC-CGCGU-GAACGCGCAGCa----- -3'
miRNA:   3'- -CGcGCGCGuUUUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 41491 0.66 0.997246
Target:  5'- aGCG-GUGCAAAAUGaCGcCGACUuugcauuGUUGGu -3'
miRNA:   3'- -CGCgCGCGUUUUGC-GC-GUUGA-------UAACC- -5'
21341 5' -49.2 NC_004778.3 + 4607 0.66 0.996209
Target:  5'- cGCGUGC-CAGGcCGCGCGAUUcc-GGa -3'
miRNA:   3'- -CGCGCGcGUUUuGCGCGUUGAuaaCC- -5'
21341 5' -49.2 NC_004778.3 + 108420 0.66 0.996209
Target:  5'- cGCG-GCGCAGgugGACGCGCugguGCgccgcGGg -3'
miRNA:   3'- -CGCgCGCGUU---UUGCGCGu---UGauaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 124284 0.66 0.996789
Target:  5'- gGCGCGCuuCAAGAaugcugaaGCGCGGCgccggcgUGGg -3'
miRNA:   3'- -CGCGCGc-GUUUUg-------CGCGUUGaua----ACC- -5'
21341 5' -49.2 NC_004778.3 + 10050 0.66 0.996209
Target:  5'- aGCGCGUGCGcAACaUGCAAaaGUUGa -3'
miRNA:   3'- -CGCGCGCGUuUUGcGCGUUgaUAACc -5'
21341 5' -49.2 NC_004778.3 + 2137 0.66 0.996209
Target:  5'- uGCGC-CGCA--GCGUGCAcgaGCUGUg-- -3'
miRNA:   3'- -CGCGcGCGUuuUGCGCGU---UGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 9674 0.66 0.996789
Target:  5'- -gGCGCGCAAAucgucgauacGCGCGCggUa----- -3'
miRNA:   3'- cgCGCGCGUUU----------UGCGCGuuGauaacc -5'
21341 5' -49.2 NC_004778.3 + 83621 0.66 0.996789
Target:  5'- aGCGguaCGCGgacaAAGACGuCGCAAUUGUUGu -3'
miRNA:   3'- -CGC---GCGCg---UUUUGC-GCGUUGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 107622 0.67 0.993937
Target:  5'- cGCGCGCGCAAcuagacaaAugGCGUGAg------ -3'
miRNA:   3'- -CGCGCGCGUU--------UugCGCGUUgauaacc -5'
21341 5' -49.2 NC_004778.3 + 28037 0.67 0.993937
Target:  5'- gGCG-GCG-AGGACGCGCuGCUGaacUGGa -3'
miRNA:   3'- -CGCgCGCgUUUUGCGCGuUGAUa--ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.