miRNA display CGI


Results 41 - 60 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 25690 0.67 0.995547
Target:  5'- -gGCGCGCG--AUGCGCGAUaAgcGGu -3'
miRNA:   3'- cgCGCGCGUuuUGCGCGUUGaUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 56113 0.67 0.995547
Target:  5'- gGCG-GCGaCAuguGCGUGCAGCaagUGGa -3'
miRNA:   3'- -CGCgCGC-GUuu-UGCGCGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 25151 0.67 0.991776
Target:  5'- gGCGCGUGCAAAccugcacguucuuGCGgCGCAGacaagGUUGc -3'
miRNA:   3'- -CGCGCGCGUUU-------------UGC-GCGUUga---UAACc -5'
21341 5' -49.2 NC_004778.3 + 29287 0.67 0.992973
Target:  5'- cCGUGCGUgAGGGCGCGUAACg----- -3'
miRNA:   3'- cGCGCGCG-UUUUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 77737 0.67 0.992973
Target:  5'- cCGCGCGCAc--CGaGCGACUGUUu- -3'
miRNA:   3'- cGCGCGCGUuuuGCgCGUUGAUAAcc -5'
21341 5' -49.2 NC_004778.3 + 121688 0.67 0.992973
Target:  5'- cGCGUGCGCuucACGUGCAggcccGCgucgGGc -3'
miRNA:   3'- -CGCGCGCGuuuUGCGCGU-----UGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 28037 0.67 0.993937
Target:  5'- gGCG-GCG-AGGACGCGCuGCUGaacUGGa -3'
miRNA:   3'- -CGCgCGCgUUUUGCGCGuUGAUa--ACC- -5'
21341 5' -49.2 NC_004778.3 + 106626 0.67 0.993937
Target:  5'- gGCGUGuCGCAAAcGCuGCGCAGCg----- -3'
miRNA:   3'- -CGCGC-GCGUUU-UG-CGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 107622 0.67 0.993937
Target:  5'- cGCGCGCGCAAcuagacaaAugGCGUGAg------ -3'
miRNA:   3'- -CGCGCGCGUU--------UugCGCGUUgauaacc -5'
21341 5' -49.2 NC_004778.3 + 96715 0.67 0.99463
Target:  5'- cGCGCGCGCGuguuaauuugauAACGCGCuuuu-UUGc -3'
miRNA:   3'- -CGCGCGCGUu-----------UUGCGCGuugauAACc -5'
21341 5' -49.2 NC_004778.3 + 80430 0.67 0.991891
Target:  5'- gGCGCcagcCGCAccGCGCGCAACg----- -3'
miRNA:   3'- -CGCGc---GCGUuuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 70485 0.67 0.991891
Target:  5'- uGCGCGaCGCGuaucacauuuGCGCGgAugUAgcagUGGa -3'
miRNA:   3'- -CGCGC-GCGUuu--------UGCGCgUugAUa---ACC- -5'
21341 5' -49.2 NC_004778.3 + 19126 0.67 0.994792
Target:  5'- cGgGCGCGCGAGcgGCGCuguuucgaacacGAC-AUUGGa -3'
miRNA:   3'- -CgCGCGCGUUUugCGCG------------UUGaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 36705 0.67 0.994792
Target:  5'- cGCGCuCGcCAAGACGCGCAcCgcc-GGc -3'
miRNA:   3'- -CGCGcGC-GUUUUGCGCGUuGauaaCC- -5'
21341 5' -49.2 NC_004778.3 + 16313 0.67 0.994792
Target:  5'- gGCGUcgGCGUGAuAACuGCGCAgucGCUGUUGa -3'
miRNA:   3'- -CGCG--CGCGUU-UUG-CGCGU---UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 54634 0.67 0.995547
Target:  5'- aGCGaugcaGCaGCGAGACGCGUugGACcagUGGu -3'
miRNA:   3'- -CGCg----CG-CGUUUUGCGCG--UUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 68573 0.67 0.995547
Target:  5'- uUGCGCGCAAGAUGUuguuuuGCAAauugaccaGUUGGu -3'
miRNA:   3'- cGCGCGCGUUUUGCG------CGUUga------UAACC- -5'
21341 5' -49.2 NC_004778.3 + 95784 0.67 0.995547
Target:  5'- gGCaGCGCGCcGGcCGCGCuGCgccccgUGGa -3'
miRNA:   3'- -CG-CGCGCGuUUuGCGCGuUGaua---ACC- -5'
21341 5' -49.2 NC_004778.3 + 95850 0.67 0.995547
Target:  5'- uGCGCGcCGUAAGcACGgGCGACa----- -3'
miRNA:   3'- -CGCGC-GCGUUU-UGCgCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 113941 0.67 0.991891
Target:  5'- aGCGCG-GCGGAugGCGCAc------- -3'
miRNA:   3'- -CGCGCgCGUUUugCGCGUugauaacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.