Results 61 - 80 of 223 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 28037 | 0.67 | 0.993937 |
Target: 5'- gGCG-GCG-AGGACGCGCuGCUGaacUGGa -3' miRNA: 3'- -CGCgCGCgUUUUGCGCGuUGAUa--ACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 121688 | 0.67 | 0.992973 |
Target: 5'- cGCGUGCGCuucACGUGCAggcccGCgucgGGc -3' miRNA: 3'- -CGCGCGCGuuuUGCGCGU-----UGauaaCC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 77737 | 0.67 | 0.992973 |
Target: 5'- cCGCGCGCAc--CGaGCGACUGUUu- -3' miRNA: 3'- cGCGCGCGUuuuGCgCGUUGAUAAcc -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 113941 | 0.67 | 0.991891 |
Target: 5'- aGCGCG-GCGGAugGCGCAc------- -3' miRNA: 3'- -CGCGCgCGUUUugCGCGUugauaacc -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 70485 | 0.67 | 0.991891 |
Target: 5'- uGCGCGaCGCGuaucacauuuGCGCGgAugUAgcagUGGa -3' miRNA: 3'- -CGCGC-GCGUuu--------UGCGCgUugAUa---ACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 80430 | 0.67 | 0.991891 |
Target: 5'- gGCGCcagcCGCAccGCGCGCAACg----- -3' miRNA: 3'- -CGCGc---GCGUuuUGCGCGUUGauaacc -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 107622 | 0.67 | 0.993937 |
Target: 5'- cGCGCGCGCAAcuagacaaAugGCGUGAg------ -3' miRNA: 3'- -CGCGCGCGUU--------UugCGCGUUgauaacc -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 127422 | 0.67 | 0.994711 |
Target: 5'- uUGUGCGCGGAAauuguuuUGCGCAgguagagcuuGCUggUGGg -3' miRNA: 3'- cGCGCGCGUUUU-------GCGCGU----------UGAuaACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 25151 | 0.67 | 0.991776 |
Target: 5'- gGCGCGUGCAAAccugcacguucuuGCGgCGCAGacaagGUUGc -3' miRNA: 3'- -CGCGCGCGUUU-------------UGC-GCGUUga---UAACc -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 68573 | 0.67 | 0.995547 |
Target: 5'- uUGCGCGCAAGAUGUuguuuuGCAAauugaccaGUUGGu -3' miRNA: 3'- cGCGCGCGUUUUGCG------CGUUga------UAACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 54634 | 0.67 | 0.995547 |
Target: 5'- aGCGaugcaGCaGCGAGACGCGUugGACcagUGGu -3' miRNA: 3'- -CGCg----CG-CGUUUUGCGCG--UUGauaACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 16313 | 0.67 | 0.994792 |
Target: 5'- gGCGUcgGCGUGAuAACuGCGCAgucGCUGUUGa -3' miRNA: 3'- -CGCG--CGCGUU-UUG-CGCGU---UGAUAACc -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 36705 | 0.67 | 0.994792 |
Target: 5'- cGCGCuCGcCAAGACGCGCAcCgcc-GGc -3' miRNA: 3'- -CGCGcGC-GUUUUGCGCGUuGauaaCC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 95850 | 0.67 | 0.995547 |
Target: 5'- uGCGCGcCGUAAGcACGgGCGACa----- -3' miRNA: 3'- -CGCGC-GCGUUU-UGCgCGUUGauaacc -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 95784 | 0.67 | 0.995547 |
Target: 5'- gGCaGCGCGCcGGcCGCGCuGCgccccgUGGa -3' miRNA: 3'- -CG-CGCGCGuUUuGCGCGuUGaua---ACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 19126 | 0.67 | 0.994792 |
Target: 5'- cGgGCGCGCGAGcgGCGCuguuucgaacacGAC-AUUGGa -3' miRNA: 3'- -CgCGCGCGUUUugCGCG------------UUGaUAACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 83266 | 0.68 | 0.989331 |
Target: 5'- uGCaGaCGCGCGGAACGgCGCGGCg----- -3' miRNA: 3'- -CG-C-GCGCGUUUUGC-GCGUUGauaacc -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 90399 | 0.68 | 0.989331 |
Target: 5'- aCGCGCGCAauggaccauGAACGgGCuGugUuUUGGa -3' miRNA: 3'- cGCGCGCGU---------UUUGCgCG-UugAuAACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 28003 | 0.68 | 0.99068 |
Target: 5'- -aGCGCGCAccuGCGaGCAACgcaUGGc -3' miRNA: 3'- cgCGCGCGUuu-UGCgCGUUGauaACC- -5' |
|||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 52538 | 0.68 | 0.99068 |
Target: 5'- uGCGUGuUGCAAAACGC-CAcCaGUUGGc -3' miRNA: 3'- -CGCGC-GCGUUUUGCGcGUuGaUAACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home