miRNA display CGI


Results 81 - 100 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 52538 0.68 0.99068
Target:  5'- uGCGUGuUGCAAAACGC-CAcCaGUUGGc -3'
miRNA:   3'- -CGCGC-GCGUUUUGCGcGUuGaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 28003 0.68 0.99068
Target:  5'- -aGCGCGCAccuGCGaGCAACgcaUGGc -3'
miRNA:   3'- cgCGCGCGUuu-UGCgCGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 87920 0.68 0.99068
Target:  5'- aCGuCGCGCAacagacaagucGAugGCGCGGgcAUUGGu -3'
miRNA:   3'- cGC-GCGCGU-----------UUugCGCGUUgaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 33846 0.68 0.989331
Target:  5'- uGUGCGCGCA--ACGUGUcauACg--UGGu -3'
miRNA:   3'- -CGCGCGCGUuuUGCGCGu--UGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 58097 0.68 0.989331
Target:  5'- aGCGCaGCGCAGGcGCGCGCGu---UUGc -3'
miRNA:   3'- -CGCG-CGCGUUU-UGCGCGUugauAACc -5'
21341 5' -49.2 NC_004778.3 + 2548 0.68 0.983976
Target:  5'- uGCGgGCgGCGAccuuuaguuguCGCGCAAUUGUUGa -3'
miRNA:   3'- -CGCgCG-CGUUuu---------GCGCGUUGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 26333 0.68 0.984361
Target:  5'- uGC-CGCGCAAa--GCGCAACUGc--- -3'
miRNA:   3'- -CGcGCGCGUUuugCGCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 57948 0.68 0.984361
Target:  5'- cGCGCGCGCcu-GCGCuGCGcugGCUGc--- -3'
miRNA:   3'- -CGCGCGCGuuuUGCG-CGU---UGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 2827 0.68 0.986182
Target:  5'- --aCGCGCAGGACGCGCcACa----- -3'
miRNA:   3'- cgcGCGCGUUUUGCGCGuUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 15160 0.68 0.986182
Target:  5'- uCGUGCGgGAcACGCGCGACa----- -3'
miRNA:   3'- cGCGCGCgUUuUGCGCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 45145 0.68 0.986182
Target:  5'- gGC-CGCGCGAAAUGCGCuggaucgcgAGCUAg--- -3'
miRNA:   3'- -CGcGCGCGUUUUGCGCG---------UUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 11774 0.68 0.986182
Target:  5'- uGCGCGgacccguuaaaGCAAAACGCGCcgUU-UUGGa -3'
miRNA:   3'- -CGCGCg----------CGUUUUGCGCGuuGAuAACC- -5'
21341 5' -49.2 NC_004778.3 + 90399 0.68 0.989331
Target:  5'- aCGCGCGCAauggaccauGAACGgGCuGugUuUUGGa -3'
miRNA:   3'- cGCGCGCGU---------UUUGCgCG-UugAuAACC- -5'
21341 5' -49.2 NC_004778.3 + 83266 0.68 0.989331
Target:  5'- uGCaGaCGCGCGGAACGgCGCGGCg----- -3'
miRNA:   3'- -CG-C-GCGCGUUUUGC-GCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 37284 0.68 0.99068
Target:  5'- aUGCGCGCAAAACGUcCGAa---UGGc -3'
miRNA:   3'- cGCGCGCGUUUUGCGcGUUgauaACC- -5'
21341 5' -49.2 NC_004778.3 + 128953 0.68 0.99068
Target:  5'- uGUGCGCGUcaccUGCGUuuUUAUUGGg -3'
miRNA:   3'- -CGCGCGCGuuuuGCGCGuuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 26849 0.68 0.987835
Target:  5'- cGCGCGCGCugcguuuCGCGUugaacaaaaaaGACUAUg-- -3'
miRNA:   3'- -CGCGCGCGuuuu---GCGCG-----------UUGAUAacc -5'
21341 5' -49.2 NC_004778.3 + 69946 0.68 0.987835
Target:  5'- uGC-CGCGCuuaAAAGCGCGCuGCUAg--- -3'
miRNA:   3'- -CGcGCGCG---UUUUGCGCGuUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 37831 0.68 0.987835
Target:  5'- aGCGCGCgGCGAcACGCGUggUg----- -3'
miRNA:   3'- -CGCGCG-CGUUuUGCGCGuuGauaacc -5'
21341 5' -49.2 NC_004778.3 + 47360 0.68 0.986182
Target:  5'- cGC-CGCuGCAcAGCGUGCGGCguuauuUUGGg -3'
miRNA:   3'- -CGcGCG-CGUuUUGCGCGUUGau----AACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.