miRNA display CGI


Results 101 - 120 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21341 5' -49.2 NC_004778.3 + 26333 0.68 0.984361
Target:  5'- uGC-CGCGCAAa--GCGCAACUGc--- -3'
miRNA:   3'- -CGcGCGCGUUuugCGCGUUGAUaacc -5'
21341 5' -49.2 NC_004778.3 + 2548 0.68 0.983976
Target:  5'- uGCGgGCgGCGAccuuuaguuguCGCGCAAUUGUUGa -3'
miRNA:   3'- -CGCgCG-CGUUuu---------GCGCGUUGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 15857 0.68 0.984361
Target:  5'- gGCGCaucucGCGCAGcAGCGCGCcAUcgucgagcaguUGUUGGu -3'
miRNA:   3'- -CGCG-----CGCGUU-UUGCGCGuUG-----------AUAACC- -5'
21341 5' -49.2 NC_004778.3 + 83266 0.68 0.989331
Target:  5'- uGCaGaCGCGCGGAACGgCGCGGCg----- -3'
miRNA:   3'- -CG-C-GCGCGUUUUGC-GCGUUGauaacc -5'
21341 5' -49.2 NC_004778.3 + 90399 0.68 0.989331
Target:  5'- aCGCGCGCAauggaccauGAACGgGCuGugUuUUGGa -3'
miRNA:   3'- cGCGCGCGU---------UUUGCgCG-UugAuAACC- -5'
21341 5' -49.2 NC_004778.3 + 28003 0.68 0.99068
Target:  5'- -aGCGCGCAccuGCGaGCAACgcaUGGc -3'
miRNA:   3'- cgCGCGCGUuu-UGCgCGUUGauaACC- -5'
21341 5' -49.2 NC_004778.3 + 52538 0.68 0.99068
Target:  5'- uGCGUGuUGCAAAACGC-CAcCaGUUGGc -3'
miRNA:   3'- -CGCGC-GCGUUUUGCGcGUuGaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 28887 0.68 0.98511
Target:  5'- cGCGUGCGCGAugAACGCguguucaaucgcuuGCAgcgcugcagcgagcGCUAUUGu -3'
miRNA:   3'- -CGCGCGCGUU--UUGCG--------------CGU--------------UGAUAACc -5'
21341 5' -49.2 NC_004778.3 + 86079 0.68 0.984361
Target:  5'- uCGCuGCGUcAGGCGUGCcGCUAaUGGu -3'
miRNA:   3'- cGCG-CGCGuUUUGCGCGuUGAUaACC- -5'
21341 5' -49.2 NC_004778.3 + 58097 0.68 0.989331
Target:  5'- aGCGCaGCGCAGGcGCGCGCGu---UUGc -3'
miRNA:   3'- -CGCG-CGCGUUU-UGCGCGUugauAACc -5'
21341 5' -49.2 NC_004778.3 + 93781 0.68 0.984361
Target:  5'- -gGCGCGCAGAcaauugaauucGCGCGCcACgcacagcaUGGg -3'
miRNA:   3'- cgCGCGCGUUU-----------UGCGCGuUGaua-----ACC- -5'
21341 5' -49.2 NC_004778.3 + 12639 0.69 0.982364
Target:  5'- cCGgGCG-AGAGCGCGCAACaAUaGGc -3'
miRNA:   3'- cGCgCGCgUUUUGCGCGUUGaUAaCC- -5'
21341 5' -49.2 NC_004778.3 + 88219 0.69 0.977553
Target:  5'- gGCGCGgccgcccgucaaaCGCGAAaccACGUGCGACggugUGGc -3'
miRNA:   3'- -CGCGC-------------GCGUUU---UGCGCGUUGaua-ACC- -5'
21341 5' -49.2 NC_004778.3 + 105149 0.69 0.980181
Target:  5'- gGCGC-CGCG--GCGCGC--UUGUUGGc -3'
miRNA:   3'- -CGCGcGCGUuuUGCGCGuuGAUAACC- -5'
21341 5' -49.2 NC_004778.3 + 9407 0.69 0.977802
Target:  5'- cGCGCGCaaacuGCAGcaguuuggcguGGCGCGCAc--GUUGGa -3'
miRNA:   3'- -CGCGCG-----CGUU-----------UUGCGCGUugaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 118782 0.69 0.977802
Target:  5'- gGCGCgGCGCGGccGGCGCGCAcaAUUAcgaGGc -3'
miRNA:   3'- -CGCG-CGCGUU--UUGCGCGU--UGAUaa-CC- -5'
21341 5' -49.2 NC_004778.3 + 104476 0.69 0.977802
Target:  5'- cGCuGCGUGCAAcaccucGACGCGUAuu--UUGGg -3'
miRNA:   3'- -CG-CGCGCGUU------UUGCGCGUugauAACC- -5'
21341 5' -49.2 NC_004778.3 + 118866 0.69 0.977802
Target:  5'- gGCGCGCGCA-----CGCAACUGa-GGa -3'
miRNA:   3'- -CGCGCGCGUuuugcGCGUUGAUaaCC- -5'
21341 5' -49.2 NC_004778.3 + 1642 0.69 0.982364
Target:  5'- uGCGCuGCGgAAAGCGaCGCGuc-GUUGGc -3'
miRNA:   3'- -CGCG-CGCgUUUUGC-GCGUugaUAACC- -5'
21341 5' -49.2 NC_004778.3 + 6738 0.69 0.982364
Target:  5'- cCGCGCGCAAA-CGCGauuuGCgUGUUGc -3'
miRNA:   3'- cGCGCGCGUUUuGCGCgu--UG-AUAACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.