Results 121 - 140 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 118866 | 0.69 | 0.977802 |
Target: 5'- gGCGCGCGCA-----CGCAACUGa-GGa -3' miRNA: 3'- -CGCGCGCGUuuugcGCGUUGAUaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 118782 | 0.69 | 0.977802 |
Target: 5'- gGCGCgGCGCGGccGGCGCGCAcaAUUAcgaGGc -3' miRNA: 3'- -CGCG-CGCGUU--UUGCGCGU--UGAUaa-CC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 1642 | 0.69 | 0.982364 |
Target: 5'- uGCGCuGCGgAAAGCGaCGCGuc-GUUGGc -3' miRNA: 3'- -CGCG-CGCgUUUUGC-GCGUugaUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 38086 | 0.69 | 0.982364 |
Target: 5'- uGCG-GCGCG--ACGCGCAACa----- -3' miRNA: 3'- -CGCgCGCGUuuUGCGCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 12639 | 0.69 | 0.982364 |
Target: 5'- cCGgGCG-AGAGCGCGCAACaAUaGGc -3' miRNA: 3'- cGCgCGCgUUUUGCGCGUUGaUAaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 89735 | 0.69 | 0.97522 |
Target: 5'- uGCGCGCGU---GCGgCGCGACUu---- -3' miRNA: 3'- -CGCGCGCGuuuUGC-GCGUUGAuaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 80300 | 0.69 | 0.976278 |
Target: 5'- cGUGCGCGUGAAacagugucccgucccGuCGCGCGACUGg--- -3' miRNA: 3'- -CGCGCGCGUUU---------------U-GCGCGUUGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 43898 | 0.69 | 0.983185 |
Target: 5'- cGCGCGCGguGGACacaugaugugucccgGCGCGGCg----- -3' miRNA: 3'- -CGCGCGCguUUUG---------------CGCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 45084 | 0.69 | 0.982364 |
Target: 5'- gGCGCGCGCGGuacAGCaGCGCcguuuauagucAACUGUg-- -3' miRNA: 3'- -CGCGCGCGUU---UUG-CGCG-----------UUGAUAacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 45753 | 0.69 | 0.982364 |
Target: 5'- gGCGCGgcuaUGCAGAAgGCGCGccaggcGCUGgaGGa -3' miRNA: 3'- -CGCGC----GCGUUUUgCGCGU------UGAUaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 89106 | 0.69 | 0.982364 |
Target: 5'- uGCGCGCGC---ACGCGCuuccacucAACUAc--- -3' miRNA: 3'- -CGCGCGCGuuuUGCGCG--------UUGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 50371 | 0.69 | 0.982364 |
Target: 5'- gGCGCGUGguGAccgucGCGCGCcACUGc--- -3' miRNA: 3'- -CGCGCGCguUU-----UGCGCGuUGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 52372 | 0.69 | 0.980181 |
Target: 5'- cCGCGCGCAGcGAUGuCGCAACa----- -3' miRNA: 3'- cGCGCGCGUU-UUGC-GCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 47545 | 0.69 | 0.980181 |
Target: 5'- aCGCGCGC---GCGUGCGACa----- -3' miRNA: 3'- cGCGCGCGuuuUGCGCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 48880 | 0.69 | 0.980181 |
Target: 5'- cGUGCGUGCGAAcccguCGCcGCGGCUAc--- -3' miRNA: 3'- -CGCGCGCGUUUu----GCG-CGUUGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 110106 | 0.69 | 0.980181 |
Target: 5'- uGgGCGCGCc-GACGUGCAAaugGUUGc -3' miRNA: 3'- -CgCGCGCGuuUUGCGCGUUga-UAACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 121970 | 0.69 | 0.980181 |
Target: 5'- aGCGCGggcgacaucaacCGCAuuACGCGCGGCa----- -3' miRNA: 3'- -CGCGC------------GCGUuuUGCGCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 40649 | 0.69 | 0.980181 |
Target: 5'- aGCGC-CGCAAGACGCa-AACUGUUc- -3' miRNA: 3'- -CGCGcGCGUUUUGCGcgUUGAUAAcc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 124231 | 0.69 | 0.977802 |
Target: 5'- cCGCGCGCAucAGCGCGCcguGCa----- -3' miRNA: 3'- cGCGCGCGUu-UUGCGCGu--UGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 6738 | 0.69 | 0.982364 |
Target: 5'- cCGCGCGCAAA-CGCGauuuGCgUGUUGc -3' miRNA: 3'- cGCGCGCGUUUuGCGCgu--UG-AUAACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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