Results 21 - 40 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 60500 | 0.74 | 0.838569 |
Target: 5'- -gGCGCGCGAAaucuacGCGCGCAACccuaccgUGUUGc -3' miRNA: 3'- cgCGCGCGUUU------UGCGCGUUG-------AUAACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 111747 | 0.74 | 0.847098 |
Target: 5'- gGCGCGCGUAAcaccGCGCGCcguccguGACU-UUGGc -3' miRNA: 3'- -CGCGCGCGUUu---UGCGCG-------UUGAuAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 29477 | 0.74 | 0.856229 |
Target: 5'- aGCGCGCGC----CGCGCcaccuucgaaGAUUAUUGGc -3' miRNA: 3'- -CGCGCGCGuuuuGCGCG----------UUGAUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 38357 | 0.74 | 0.839431 |
Target: 5'- cGCGCGCGCu-AGCGCGCAu------- -3' miRNA: 3'- -CGCGCGCGuuUUGCGCGUugauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 29339 | 0.74 | 0.847939 |
Target: 5'- gGCGCGCGCugggguGCGCcaaGCGGCUGUa-- -3' miRNA: 3'- -CGCGCGCGuuu---UGCG---CGUUGAUAacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 23750 | 0.74 | 0.839431 |
Target: 5'- aGCGCGUGCGccGAUGCuuGCAGCUAaagUGGc -3' miRNA: 3'- -CGCGCGCGUu-UUGCG--CGUUGAUa--ACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 88962 | 0.74 | 0.830714 |
Target: 5'- aGCGCGUGC---GCGCGCAugucuacaaGCUuuUUGGg -3' miRNA: 3'- -CGCGCGCGuuuUGCGCGU---------UGAu-AACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 17036 | 0.74 | 0.839431 |
Target: 5'- aGUGCagauGUGCAAAAUGCGCAACUcggcGGg -3' miRNA: 3'- -CGCG----CGCGUUUUGCGCGUUGAuaa-CC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 61647 | 0.74 | 0.821796 |
Target: 5'- aGCGCGCGCcAAcgccGCGCGCAuGCUGg--- -3' miRNA: 3'- -CGCGCGCGuUU----UGCGCGU-UGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 48134 | 0.73 | 0.887068 |
Target: 5'- uGCGCGCGU---GCGCGCGuACUGg--- -3' miRNA: 3'- -CGCGCGCGuuuUGCGCGU-UGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 54217 | 0.73 | 0.894166 |
Target: 5'- uUGCGuCGCuuguauguCGCGCAACUGUUGu -3' miRNA: 3'- cGCGC-GCGuuuu----GCGCGUUGAUAACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 38504 | 0.73 | 0.864294 |
Target: 5'- aUGCGCGCuagcGCGCGCGACgaccGGu -3' miRNA: 3'- cGCGCGCGuuu-UGCGCGUUGauaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 91184 | 0.73 | 0.894166 |
Target: 5'- gGCGCuCGCGuucACGCGCAcggaUAUUGGa -3' miRNA: 3'- -CGCGcGCGUuu-UGCGCGUug--AUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 10405 | 0.73 | 0.864294 |
Target: 5'- cCGCGCGCAAucGGCGCGCugcgcACUAa--- -3' miRNA: 3'- cGCGCGCGUU--UUGCGCGu----UGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 34179 | 0.73 | 0.864294 |
Target: 5'- uGCGCaGCauGCAGGACGUGCugugGCUGUUGu -3' miRNA: 3'- -CGCG-CG--CGUUUUGCGCGu---UGAUAACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 82415 | 0.73 | 0.864294 |
Target: 5'- aGCGUGCGCAAcguuUGCaGCAGCgaAUUGGu -3' miRNA: 3'- -CGCGCGCGUUuu--GCG-CGUUGa-UAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 95406 | 0.73 | 0.884889 |
Target: 5'- aGCGCGuCGCAGcuuagcGACGCGCGcuacGCUGUcaugcuguacccguUGGu -3' miRNA: 3'- -CGCGC-GCGUU------UUGCGCGU----UGAUA--------------ACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 8815 | 0.72 | 0.913918 |
Target: 5'- gGCGCGCucaGCGAAugGCGCcuACUAa--- -3' miRNA: 3'- -CGCGCG---CGUUUugCGCGu-UGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 124084 | 0.72 | 0.913918 |
Target: 5'- -gGCGCGCugauGCGCGCggUUGgcGGc -3' miRNA: 3'- cgCGCGCGuuu-UGCGCGuuGAUaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 10268 | 0.72 | 0.910155 |
Target: 5'- uGCGCGCGgGAccggcGGCGCauugcaaaggcgcucGCGACUucGUUGGg -3' miRNA: 3'- -CGCGCGCgUU-----UUGCG---------------CGUUGA--UAACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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