Results 41 - 60 of 223 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21341 | 5' | -49.2 | NC_004778.3 | + | 6946 | 0.72 | 0.901009 |
Target: 5'- uGUGCGCGCuaauAAACuuGUcGCUGUUGGc -3' miRNA: 3'- -CGCGCGCGu---UUUGcgCGuUGAUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 69699 | 0.72 | 0.901009 |
Target: 5'- aGCGUGUGCAAGACcaaccuGCGCGACg----- -3' miRNA: 3'- -CGCGCGCGUUUUG------CGCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 109968 | 0.72 | 0.919978 |
Target: 5'- gGCGCGCcCAuuACGUGCGACgacaagcUGGu -3' miRNA: 3'- -CGCGCGcGUuuUGCGCGUUGaua----ACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 61784 | 0.72 | 0.901009 |
Target: 5'- gGCGCGCGCu-GGCuGCGCGGCg----- -3' miRNA: 3'- -CGCGCGCGuuUUG-CGCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 32837 | 0.72 | 0.907595 |
Target: 5'- aGCG-GCGU-AGACGCGCAGCUGc--- -3' miRNA: 3'- -CGCgCGCGuUUUGCGCGUUGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 14363 | 0.72 | 0.919978 |
Target: 5'- aUGCGCuGCAAcGCGCGCGACa----- -3' miRNA: 3'- cGCGCG-CGUUuUGCGCGUUGauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 8815 | 0.72 | 0.913918 |
Target: 5'- gGCGCGCucaGCGAAugGCGCcuACUAa--- -3' miRNA: 3'- -CGCGCG---CGUUUugCGCGu-UGAUaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 124723 | 0.72 | 0.924635 |
Target: 5'- uGCGCGCGCGccuacgugacucGGCGCGC-GCUGUUu- -3' miRNA: 3'- -CGCGCGCGUu-----------UUGCGCGuUGAUAAcc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 127005 | 0.72 | 0.919978 |
Target: 5'- aCGUGCGCAAcuugcaGGCGCGCGAUUuugUGu -3' miRNA: 3'- cGCGCGCGUU------UUGCGCGUUGAua-ACc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 58294 | 0.72 | 0.913918 |
Target: 5'- gGCGCGCugggcuuuGCAGgcgucGGCGCGUuuAACUcgUGGg -3' miRNA: 3'- -CGCGCG--------CGUU-----UUGCGCG--UUGAuaACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 10268 | 0.72 | 0.910155 |
Target: 5'- uGCGCGCGgGAccggcGGCGCauugcaaaggcgcucGCGACUucGUUGGg -3' miRNA: 3'- -CGCGCGCgUU-----UUGCG---------------CGUUGA--UAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 14247 | 0.71 | 0.950777 |
Target: 5'- uCGCGguUGCAAu-CGCGCGguacGCUAUUGGu -3' miRNA: 3'- cGCGC--GCGUUuuGCGCGU----UGAUAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 53876 | 0.71 | 0.9463 |
Target: 5'- uUGCGCGCAGcGCGCGCAu------- -3' miRNA: 3'- cGCGCGCGUUuUGCGCGUugauaacc -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 8635 | 0.71 | 0.940092 |
Target: 5'- cGCGCuuGCGGAACGCGCcugaaccggccauuAGCUucUGGu -3' miRNA: 3'- -CGCGcgCGUUUUGCGCG--------------UUGAuaACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 40328 | 0.71 | 0.936565 |
Target: 5'- uGUGC-CGCA--ACGCGCGGCUGcccaacgUGGa -3' miRNA: 3'- -CGCGcGCGUuuUGCGCGUUGAUa------ACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 5101 | 0.71 | 0.931301 |
Target: 5'- cUGUGCGC-GAACGUGCAGCUcgcgcUGGc -3' miRNA: 3'- cGCGCGCGuUUUGCGCGUUGAua---ACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 116788 | 0.71 | 0.931301 |
Target: 5'- uGgGCGCGUAAAACGCGUucAGCgugccGGu -3' miRNA: 3'- -CgCGCGCGUUUUGCGCG--UUGauaa-CC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 95005 | 0.71 | 0.950777 |
Target: 5'- cGCGCGCGCcguGCGC-CGACg---GGc -3' miRNA: 3'- -CGCGCGCGuuuUGCGcGUUGauaaCC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 9519 | 0.71 | 0.950777 |
Target: 5'- cGCGCGCGUAucgacgauuuGCGCGCcgUU-UUGGa -3' miRNA: 3'- -CGCGCGCGUuu--------UGCGCGuuGAuAACC- -5' |
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21341 | 5' | -49.2 | NC_004778.3 | + | 84153 | 0.71 | 0.9463 |
Target: 5'- aGCaUGCGCGucAgGCGUuGCUAUUGGa -3' miRNA: 3'- -CGcGCGCGUuuUgCGCGuUGAUAACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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